# Pharmacogenomics of Antineoplastic Therapy in Children: Genetic Determinants of Toxicity and Efficacy

**Authors:** Zaure Dushimova, Timur Saliev, Aigul Bazarbayeva, Gaukhar Nurzhanova, Ainura Baibadilova, Gulnara Abdilova, Ildar Fakhradiyev

PMC · DOI: 10.3390/pharmaceutics18020165 · 2026-01-27

## TL;DR

This review explores how genetic differences affect children's responses to cancer drugs, aiming to personalize treatment for better outcomes and fewer side effects.

## Contribution

The paper synthesizes current evidence on pharmacogenetic variants influencing pediatric cancer therapy and discusses emerging technologies for clinical translation.

## Key findings

- Genetic variants like TPMT, NUDT15, and DPYD significantly influence drug response in children.
- Multi-omics and AI can accelerate pharmacogenomic data translation into clinical practice.
- Population-specific variability and ethical issues remain barriers to clinical implementation.

## Abstract

Over the past decades, remarkable progress in multimodal therapy has significantly improved survival outcomes for children with cancer. Yet, considerable variability in treatment response and toxicity persists, often driven by underlying genetic differences that affect the pharmacokinetics and pharmacodynamics of anticancer drugs. Pharmacogenomics, the study of genetic determinants of drug response, offers a powerful approach to personalize pediatric cancer therapy by optimizing efficacy while minimizing adverse effects. This review synthesizes current evidence on key pharmacogenetic variants influencing the response to major classes of antineoplastic agents used in children, including thiopurines, methotrexate, anthracyclines, alkylating agents, vinca alkaloids, and platinum compounds. Established gene–drug associations such as TPMT, NUDT15, DPYD, SLC28A3, and RARG are discussed alongside emerging biomarkers identified through genome-wide and multi-omics studies. The review also examines the major challenges that impede clinical implementation, including infrastructural limitations, cost constraints, population-specific variability, and ethical considerations. Furthermore, it highlights how integrative multi-omics, systems pharmacology, and artificial intelligence may accelerate the translation of pharmacogenomic data into clinical decision-making. The integration of pharmacogenomic testing into pediatric oncology protocols has the potential to transform cancer care by improving drug safety, enhancing treatment precision, and paving the way toward ethically grounded, personalized therapy for children.

## Linked entities

- **Genes:** TPMT (thiopurine S-methyltransferase) [NCBI Gene 7172], NUDT15 (nudix hydrolase 15) [NCBI Gene 55270], DPYD (dihydropyrimidine dehydrogenase) [NCBI Gene 1806], SLC28A3 (solute carrier family 28 member 3) [NCBI Gene 64078], RARG (retinoic acid receptor gamma) [NCBI Gene 5916]

## Full-text entities

- **Genes:** DPYD (dihydropyrimidine dehydrogenase) [NCBI Gene 1806] {aka DHP, DHPDHASE, DPD, DYPD}, GSTA1 (glutathione S-transferase alpha 1) [NCBI Gene 2938] {aka GST-epsilon, GST2, GSTA1-1, GTH1}, GSTP1 (glutathione S-transferase pi 1) [NCBI Gene 2950] {aka DFN7, FAEES3, GST3, GSTP, GSTP1-1, HEL-S-22}, CYP3A5 (cytochrome P450 family 3 subfamily A member 5) [NCBI Gene 1577] {aka CP35, CYPIIIA5, P450PCN3, PCN3}, NUDT15 (nudix hydrolase 15) [NCBI Gene 55270] {aka MTH2, NUDT15D}, ALDH1A1 (aldehyde dehydrogenase 1 family member A1) [NCBI Gene 216] {aka ALDC, ALDH-E1, ALDH1, ALDH11, HEL-9, HEL-S-53e}, RARG (retinoic acid receptor gamma) [NCBI Gene 5916] {aka NR1B3, RARC, RARgamma}, GSTK1 (glutathione S-transferase kappa 1) [NCBI Gene 373156] {aka GST, GST 13-13, GST13, GST13-13, GSTK1-1, hGSTK1}, SLCO1B1 (solute carrier organic anion transporter family member 1B1) [NCBI Gene 10599] {aka HBLRR, LST-1, OATP-C, OATP1B1, OATP2, OATPC}, SLC28A3 (solute carrier family 28 member 3) [NCBI Gene 64078] {aka CNT3}, ERCC1 (ERCC excision repair 1, endonuclease non-catalytic subunit) [NCBI Gene 2067] {aka COFS4, RAD10, UV20}, CYP2D6 (cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene)) [NCBI Gene 1565] {aka CPD6, CYP2D, CYP2D7AP, CYP2D7BP, CYP2D7P2, CYP2D8P2}, TPMT (thiopurine S-methyltransferase) [NCBI Gene 7172] {aka TPMTD}, CYP2B6 (cytochrome P450 family 2 subfamily B member 6) [NCBI Gene 1555] {aka CPB6, CYP2B, CYP2B7, CYPIIB6, EFVM, IIB1}, MTHFR (methylenetetrahydrofolate reductase) [NCBI Gene 4524]
- **Diseases:** acute lymphoblastic leukemia (MESH:D054198), ototoxicity (MESH:D006311), Toxicity (MESH:D064420), hematologic toxicity (MESH:D006402), mucositis (MESH:D052016), peripheral neuropathy (MESH:D010523), neurotoxicity (MESH:D020258), cancer (MESH:D009369), injury to (MESH:D014947), cardiotoxic (MESH:D066126), hepatic veno-occlusive disease (MESH:D006504), hemorrhagic cystitis (MESH:D006470), cardiomyopathy (MESH:D009202)
- **Chemicals:** dexrazoxane (MESH:D064730), 6-mercaptopurine (MESH:D015122), vinca alkaloids (MESH:D014748), fluoropyrimidine (-), cisplatin (MESH:D002945), doxorubicin (MESH:D004317), thioguanine (MESH:D013866), ifosfamide (MESH:D007069), tamoxifen (MESH:D013629), vincristine (MESH:D014750), azathioprine (MESH:D001379), platinum (MESH:D010984), Anthracyclines (MESH:D018943), thiopurine (MESH:C520399), cyclophosphamide (MESH:D003520), daunorubicin (MESH:D003630), methotrexate (MESH:D008727)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** A1298C, C677T, C3435T

## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12944227/full.md

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Source: https://tomesphere.com/paper/PMC12944227