# Berberine Interferes with the Molecular Landscape of Biofilm-Driven Pathogenicity

**Authors:** Anna Duda-Madej, Hanna Bazan, Jakub Łabaz, Szymon Viscardi

PMC · DOI: 10.3390/pathogens15020194 · 2026-02-10

## TL;DR

Berberine, a natural compound, shows potential in fighting biofilm-related infections by targeting multiple bacterial processes and enhancing antibiotic effectiveness.

## Contribution

This review systematically summarizes berberine's molecular mechanisms against biofilm-forming bacteria and its potential as an antibiotic adjuvant.

## Key findings

- Berberine disrupts biofilm formation by inhibiting cell adhesion, matrix synthesis, and quorum sensing.
- It enhances antibiotic efficacy by restoring bacterial sensitivity to multiple drug classes.
- Pharmacokinetic limitations of berberine suggest a need for improved delivery systems.

## Abstract

Biofilm-associated infections pose a significant clinical challenge due to their increased antibiotic tolerance and strong association with multidrug-resistant pathogens. The biofilm protects bacteria against antimicrobial agents and host immune response through a complex matrix, altered cell metabolism, activation of quorum sensing, and overexpression of efflux pumps. Despite the availability of numerous therapeutic strategies, the effectiveness of treatment of these infections remains limited, justifying the search for new pharmaceutics, e.g., compounds of natural origin. Berberine, an isoquinoline alkaloid from the plants of the Berberidaceae family, is of growing interest due to its broad spectrum of antimicrobial and antibiofilm activities. This review summarizes the current state of knowledge regarding the molecular mechanisms of action of berberine against the biofilm forming Gram-(+) and Gram-(−) bacteria. Its effect on bacterial cell adhesion, modulation of quorum sensing, inhibition of extracellular matrix synthesis, disruption of biofilm maturation, and the dispersion process are discussed. The role of berberine as an adjuvant to antibiotic therapy was also analyzed, in particular, its ability to restore bacterial sensitivity to different classes of antibiotics. The pharmacokinetic limitations of berberine and the prospects for the use of modern delivery systems are also considered. The collected data indicate that berberine is a promising factor supporting the treatment of biofilm-related infections.

## Linked entities

- **Chemicals:** berberine (PubChem CID 2353)

## Full-text entities

- **Genes:** Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Mapk14 (mitogen-activated protein kinase 14) [NCBI Gene 26416] {aka CSBP2, Crk1, Csbp1, Mxi2, PRKM14, PRKM15}, CYP2D6 (cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene)) [NCBI Gene 1565] {aka CPD6, CYP2D, CYP2D7AP, CYP2D7BP, CYP2D7P2, CYP2D8P2}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}
- **Diseases:** pancreatic, and breast cancer (MESH:D001943), IBD (MESH:D015212), bacterial (MESH:D001424), fungal (MESH:D009181), EPS (MESH:D001480), MRSA (MESH:D013203), glioblastoma (MESH:D005909), pressure ulcers (MESH:D003668), diabetic foot ulcers (MESH:D017719), A. baumannii infection (MESH:D007239), hypoglycemia (MESH:D007003), Protein synthesis disorders (MESH:D020147), cytotoxicity (MESH:D064420), wound infections (MESH:D014946), premature uterine contractions (MESH:D018880), colorectal, gastric, melanoma (MESH:D008545), inflammation (MESH:D007249), lung infection (MESH:D012141), chronic wounds (MESH:D014947), MDR (MESH:D018088), cancer (MESH:D009369), diabetic (MESH:D003920), dysbiosis (MESH:D064806), kernicterus (MESH:D007647), NAFLD (MESH:D065626), AD (MESH:D000544), neutropenic thigh infection (MESH:D044504), cystic fibrosis (MESH:D003550)
- **Chemicals:** farnesyl diphosphate (MESH:C004808), fluconazole (MESH:D015725), D-alanyl-D-alanine (MESH:C002956), fructose (MESH:D005632), imipenem (MESH:D015378), 2,5-pyridinedicarboxylic acid (MESH:C043093), lipids (MESH:D008055), LPS (MESH:D008070), glycopeptides (MESH:D006020), N-acetyl-L-cysteine (MESH:D000111), cellulose (MESH:D002482), hydrogen (MESH:D006859), L-tryptophan (MESH:D014364), beta-lactam (MESH:D047090), PLGA (MESH:D000077182), BBR (MESH:D001599), calcium (MESH:D002118), ROS (MESH:D017382), SCFA (MESH:D005232), magnesium (MESH:D008274), uridine diphosphate N-acetylglucosamine (MESH:D014537), PIA (MESH:C113579), amino sugar (MESH:D000606), AHL (-), sulbactam (MESH:D013407), glycerol (MESH:D005990), K+ (MESH:D011188), CDP-ribitol (MESH:C100069), gamma-tocopherol (MESH:D024504), amino acid (MESH:D000596), macrolides (MESH:D018942), rifampicin (MESH:D012293), carbohydrate (MESH:D002241), fatty acid (MESH:D005227), quinolones (MESH:D015363), L-phenylalanine (MESH:D010649), c-di-GMP (MESH:C062025), fluoroquinolones (MESH:D024841), clindamycin (MESH:D002981), phenol (MESH:D019800), water (MESH:D014867), CDP-glycerol (MESH:C100068), L-tyrosine (MESH:D014443), terpenes (MESH:D013729), tetracyclines (MESH:D013754), carbapenem (MESH:D015780), vancomycin (MESH:D014640), gentamicin (MESH:D005839), alkaloid (MESH:D000470), fusidic acid (MESH:D005672), teichoic acid (MESH:D013682), tobramycin (MESH:D014031), chlorides (MESH:D002712), methicillin (MESH:D008712), PQS (MESH:C407944), gold (MESH:D006046), mannose (MESH:D008358), EPS (MESH:C100219), azithromycin (MESH:D017963), metal (MESH:D008670)
- **Species:** Enterobacteriaceae (enterobacteria, family) [taxon 543], Acinetobacter baumannii (species) [taxon 470], Berberis aristata (species) [taxon 659592], Mycobacteroides abscessus (species) [taxon 36809], Hydrastis canadensis (goldenseal, species) [taxon 13569], Berberis vulgaris (common barberry, species) [taxon 258209], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Escherichia coli K-12 (strain) [taxon 83333], Candida [taxon 1535326], Enterococcus faecalis (species) [taxon 1351], Pseudomonas aeruginosa PAO1 (strain) [taxon 208964], Streptococcus pyogenes (species) [taxon 1314], Chlamydomonas reinhardtii (species) [taxon 3055], Candida albicans (species) [taxon 5476], Coptis chinensis (species) [taxon 261450], Phellodendron amurense (species) [taxon 68554], Escherichia coli (E. coli, species) [taxon 562], Salmonella (genus) [taxon 590], Pseudomonas aeruginosa (species) [taxon 287], Mus musculus (house mouse, species) [taxon 10090], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Klebsiella pneumoniae (species) [taxon 573]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943745/full.md

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Source: https://tomesphere.com/paper/PMC12943745