# Polycyclic Aromatic Hydrocarbon Pollution Stress Impairs Soil Enzyme Activity and Microbial Community

**Authors:** Yuancheng Wang, Donglei Wu, Junxiang Liu, Haolong Xu

PMC · DOI: 10.3390/microorganisms14020494 · 2026-02-18

## TL;DR

This study shows that PAH pollution harms soil enzymes and reduces microbial diversity, affecting soil health and nutrient cycling.

## Contribution

The study reveals how PAH stress alters microbial community structure and function, particularly affecting carbon and nitrogen cycling taxa.

## Key findings

- PAH stress inhibited soil enzyme activities like urease, catalase, and protease.
- PAH stress reduced microbial biomass and altered the abundance of key taxa involved in nutrient cycling.
- PAH stress increased the dominance of PAH-degrading bacteria and shifted microbial assembly processes.

## Abstract

Polycyclic aromatic hydrocarbons (PAHs) are widely prevalent harmful organic pollutants. Enzymatic activities (such as those of dehydrogenases, catalase, protease and urease), as well as the microbial community structure and assembly (through 16S and ITS amplicon sequencing), were evaluated 90 days after PAH contamination and compared to those in normal soils. Microbial activity, as indicated by soil urease, catalase, and protease activities, was inhibited under PAH stress. Furthermore, PAH stress exerted significant impacts on the soil microbial community structure. Notably, PAH stress reduced soil bacterial and fungal biomass and inhibited the abundance of microbial taxa involved in soil carbon and nitrogen cycling (e.g., Marmoricola, Pedobacter, and Streptomyces), along with the majority of predicted responsive metabolic functions, particularly those related to amino acid and carbohydrate metabolism. PAH stress enriched PAH-degrading microorganisms, including Pseudomonas, Mycobacterium, Bacillus, Cycloclasticus, and Flavobacterium. The niche breadth of bacterial and fungal communities decreased significantly under PAH stress (51.5 and 14.1, respectively) compared to that in normal soil (63.7 and 22.3), which was further supported by Beta Nearest Taxon Index and co-occurrence network analysis. PAH stress increased the contribution of heterogeneous selection to soil microbial assembly (100%) compared to that in normal soil (80%). Thus, the majority of microbial community responses to PAH stress were adversely affected. These results suggest that PAH contamination may profoundly affect the soil quality by restricting the survival space of bacteria and fungi.

## Linked entities

- **Species:** Marmoricola (taxon 86795), Pedobacter (taxon 84567), Streptomyces (taxon 1883), Pseudomonas (taxon 286), Mycobacterium (taxon 1763), Bacillus (taxon 1386), Cycloclasticus (taxon 34067), Flavobacterium (taxon 237)

## Full-text entities

- **Genes:** PPOX (protoporphyrinogen oxidase) [NCBI Gene 5498] {aka PPO, V290M, VP, VPCO}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, MND1 (meiotic nuclear divisions 1) [NCBI Gene 84057] {aka GAJ}, CAT (catalase) [NCBI Gene 847]
- **Diseases:** injury to (MESH:D014947), acute toxicity (MESH:D000208), toxicity (MESH:D064420), carcinogenic (MESH:D011230)
- **Chemicals:** nitrogen (MESH:D009584), carbon (MESH:D002244), tricarboxylic acid (MESH:D014233), Flu (MESH:C041509), chitin (MESH:D002686), Benzo[b]fluoranthene (MESH:C006703), B[a]p (MESH:D001564), Pyr (MESH:C030984), 3-hydroxybutyric acid (MESH:D020155), P (MESH:D010758), Nap (MESH:C031721), isomaltose (MESH:D007534), PAH (MESH:D011084), hemicellulose (MESH:C007916), water (MESH:D014867), benzene (MESH:D001554), p-anisic acid (MESH:C004520), TN (MESH:C009497), Amino acids (MESH:D000596), melibiose (MESH:D008553), acetone (MESH:D000096), carbohydrate (MESH:D002241), B[b]p (-), potassium (MESH:D011188), Cadmium (MESH:D002104), cellulose (MESH:D002482), Phe (MESH:C031181), HMs (MESH:D019216), DBA (MESH:C026486), AP (MESH:D000667), Ant (MESH:C034020), lipids (MESH:D008055)
- **Species:** Flavobacterium (genus) [taxon 237], Pajaroellobacter (genus) [taxon 1882917], Pedobacter (genus) [taxon 84567], Azoarcus (genus) [taxon 12960], Stenotrophobacter (genus) [taxon 1748767], Mortierella (genus) [taxon 4855], Acidibacter (genus) [taxon 1549619], Noviherbaspirillum (genus) [taxon 1344552], Candidatus Solibacter (genus) [taxon 332162], Aeromicrobium (genus) [taxon 2040], Cycloclasticus (genus) [taxon 34067], Actinomycetota (actinobacteria, phylum) [taxon 201174], Fungi (kingdom) [taxon 4751], Paenibacillus (genus) [taxon 44249], Actinomyces (genus) [taxon 1654], Cyanobacteriota (blue-green algae, phylum) [taxon 1117], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Haliangium (genus) [taxon 162027], Steroidobacter (genus) [taxon 469322], Bdellovibrio (genus) [taxon 958], Sorangium (genus) [taxon 39643], Pedomicrobium (genus) [taxon 47494], Homo sapiens (human, species) [taxon 9606], Mycobacterium (genus) [taxon 1763], Brevundimonas (genus) [taxon 41275], Nocardioides (genus) [taxon 1839], Rhodoplanes (genus) [taxon 29407], Terriglobia (class) [taxon 204432], Aurantisolimonas (genus) [taxon 2125991], Phaselicystis (genus) [taxon 651810], Ahniella (genus) [taxon 2233801], Micromonospora (genus) [taxon 1873], Bacillus (genus) [taxon 55087], Streptomyces (genus) [taxon 1883], Agromyces (genus) [taxon 33877], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Polycyclovorans (genus) [taxon 1274363], Kribbella (genus) [taxon 182639], Pseudomonas (RNA similarity group I, genus) [taxon 286], Phenylobacterium (genus) [taxon 20], Marmoricola (genus) [taxon 86795]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943699/full.md

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Source: https://tomesphere.com/paper/PMC12943699