# Biocontrol Potential of Three Bacterial Strains, Isolated from Vermicompost, Against Pre-Emergence Damping-Off of Tomato Caused by Rhizoctonia solani, Under Laboratory and Greenhouse Conditions

**Authors:** Mohamed Baha Saeed, Abdulaziz M. Alnasser, Nasser I. Alaruk, Abdulrahmn A. Algrwai, Salman A. Aloudah, Sultan M. Al-Eid, Mark D. Laing

PMC · DOI: 10.3390/microorganisms14020371 · 2026-02-04

## TL;DR

This study identifies two bacteria from vermicompost that can protect tomato seedlings from a soil disease caused by Rhizoctonia solani.

## Contribution

The novel contribution is the identification and validation of two bacterial strains (NOAC.B77 and NOAC.B42) with strong biocontrol potential against tomato damping-off.

## Key findings

- Two bacterial strains (NOAC.B77 and NOAC.B42) inhibited Rhizoctonia solani mycelial growth by over 79%.
- Greenhouse trials showed these strains significantly reduced damping-off in tomato seedlings.
- The strains could be commercialized as biological control agents for greenhouse tomato production.

## Abstract

Synthetic chemicals, such as fertilizers and pesticides, are widely used in agriculture to improve soil fertility and to control weeds, pests and diseases. Numerous studies have highlighted the negative effects of these chemicals on the soil environment. In contrast, during vermicomposting, earthworms generate numerous beneficial outcomes. This study aimed to screen antagonistic bacteria found after vermicomposting for their potential to inhibit the pre-emergence damping-off of tomato seedlings caused by Rhizoctonia solani. Using a dual culture method, 85 bacterial isolates were screened, three of which demonstrated antagonistic activity against R. solani. Molecular characterization based on 16S ribosomal RNA identified the bacterial isolates as Bacillus subtilis (NOAC.B77), Bacillus vallismortis (NOAC.B42), and Bacillus cereus (NOAC.B17). The strains NOAC.B77 and NOAC.B42 exhibited the most significant inhibitory effects on the mycelial growth of R. solani, with inhibition levels of 80.8% and 79.2%, respectively. In greenhouse trials, only 13% of the Inoculated, Unprotected Control tomato seedlings emerged, i.e., the R. solani inoculum caused an 87% level of preemergence damping off. In contrast, after treatment with the bacterial strains NOAC.B77 and NOAC.B42, tomato seedling emergence was not significantly different from the Uninoculated Control. These results suggest that the bacterial strains NOAC.B77 and NOAC.B42 could be commercialized as biological agents to control damping-off of tomato seedlings under greenhouse conditions.

## Linked entities

- **Species:** Bacillus subtilis (taxon 1423), Bacillus vallismortis (taxon 72361), Bacillus cereus (taxon 1396), Rhizoctonia solani (taxon 456999)

## Full-text entities

- **Diseases:** seed rot (MESH:D009366), plant diseases (MESH:D010939), soil-borne pathogens (MESH:D005242), fungal (MESH:D009181), toxicity (MESH:D064420), infected (MESH:D007239), stem rot (MESH:D005535), hyphal damage (MESH:D020263), black scurf disease (MESH:D063807), injury to (MESH:D014947)
- **Chemicals:** agarose (MESH:D012685), flavonoids (MESH:D005419), NA (-), tocopherols (MESH:D024505), NaOCl (MESH:D012973), phenols (MESH:D010636), vitamin A (MESH:D014801), phenolic acids (MESH:C017616), carotenoids (MESH:D002338), lycopene (MESH:D000077276), water (MESH:D014867), ascorbic acid (MESH:D001205), agar (MESH:D000362), EDTA (MESH:D004492), vitamin E (MESH:D014810)
- **Species:** Pseudomonas (RNA similarity group I, genus) [taxon 286], Rhizoctonia solani (species) [taxon 456999], Fusarium oxysporum (species) [taxon 5507], Solanum tuberosum (potatoes, species) [taxon 4113], Capsicum annuum (sweet pepper, species) [taxon 4072], Fusarium verticillioides (species) [taxon 117187], Solanum lycopersicum (tomato, species) [taxon 4081], Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Perionyx excavatus (Asian blue worm, species) [taxon 168854], Bacillus cereus ATCC 14579 (strain) [taxon 226900], Eudrilus eugeniae (species) [taxon 169957], Panax ginseng (Asiatic ginseng, species) [taxon 4054], Bacillus vallismortis (species) [taxon 72361], Eisenia fetida (brandling worm, species) [taxon 6396], Bacillus cereus (species) [taxon 1396], Bacillus subtilis (species) [taxon 1423], Malus domestica (apple, species) [taxon 3750], Fusarium solani (species) [taxon 169388], earthworms (species) [taxon 71170], Fusarium proliferatum (species) [taxon 948311]
- **Cell lines:** PP961956 — Homo sapiens (Human), Transformed cell line (CVCL_E854), NOAC.B42 — Homo sapiens (Human), Astrocytoma, Cancer cell line (CVCL_JZ68), NOAC.B17 — Homo sapiens (Human), Astrocytoma, Cancer cell line (CVCL_1608)

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943671/full.md

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Source: https://tomesphere.com/paper/PMC12943671