# Silent Intruders: The Gut Virome in Brain Aging and Cognitive Decline

**Authors:** Serena Silvestro, Angelina Midiri, Carmelo Biondo, Selene Casilli, Lucia Borrello, Sebastiana Zummo, Giuseppe Mancuso

PMC · DOI: 10.3390/pathogens15020180 · 2026-02-06

## TL;DR

This review explores how gut viruses may influence brain aging and cognitive decline, suggesting they could play a role in neurodegenerative diseases.

## Contribution

The paper introduces the gut virome as a novel factor in brain health and cognitive disorders.

## Key findings

- Gut virome alterations may contribute to brain aging and neurodegenerative diseases.
- Intestinal viruses can affect gut barrier integrity and neuroimmune inflammation.
- Understanding the gut virome could lead to new treatments for cognitive decline.

## Abstract

Recent advances in next-generation sequencing have revealed that the virome—the set of viruses residing in the gastrointestinal tract—is a fundamental yet still underexplored component of the human intestinal ecosystem. Despite the prevalence of research focused on bacterial alterations, recent findings suggest a significant role for viral elements within the intestinal microbiota, namely latent viruses, bacteriophages and eukaryotic viruses, in influencing brain health. Alterations in the gut virome may, in particular, contribute to the processes underlying brain aging, cognitive decline, and neurodegenerative diseases such as Alzheimer’s, Parkinson’s, and multiple sclerosis (MS). This review highlights the potential of intestinal viruses to modulate gut barrier integrity, systemic immune response and neuroimmune inflammation. Such interactions could promote conditions of chronic neuroinflammation, alterations in synaptic plasticity, and neuronal vulnerability. A more comprehensive understanding of the role of the gut virome could potentially result in novel approaches to the early detection and treatment of neurocognitive disorders in adults and older individuals.

## Linked entities

- **Diseases:** multiple sclerosis (MONDO:0005301)

## Full-text entities

- **Genes:** MXRA8 (matrix remodeling associated 8) [NCBI Gene 54587] {aka ASP3}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, CCR5 (C-C motif chemokine receptor 5) [NCBI Gene 1234] {aka CC-CKR-5, CCCKR5, CCR-5, CD195, CKR-5, CKR5}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, TAT (tyrosine aminotransferase) [NCBI Gene 6898], FFAR2 (free fatty acid receptor 2) [NCBI Gene 2867] {aka FFA2R, GPR43}, ITIH4 (inter-alpha-trypsin inhibitor heavy chain 4) [NCBI Gene 3700] {aka GP120, H4P, IHRP, ITI-HC4, ITIHL1, PK-120}, CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, FFAR3 (free fatty acid receptor 3) [NCBI Gene 2865] {aka FFA3R, GPR41}, IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, ANO2 (anoctamin 2) [NCBI Gene 57101] {aka C12orf3, TMEM16B}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, SLC6A4 (solute carrier family 6 member 4) [NCBI Gene 6532] {aka 5-HTT, 5-HTTLPR, 5HTT, HTT, OCD1, SERT}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, LDLRAD3 (low density lipoprotein receptor class A domain containing 3) [NCBI Gene 143458] {aka LRAD3}, IFN1@ (interferon, type 1, cluster) [NCBI Gene 3438] {aka IFNA}, CNTN2 (contactin 2) [NCBI Gene 6900] {aka AXT, EPEO5, FAME5, TAG-1, TAX, TAX1}, TLR3 (toll like receptor 3) [NCBI Gene 7098] {aka CD283, IIAE2, IMD83}, SNCA (synuclein alpha) [NCBI Gene 6622] {aka NACP, PARK1, PARK4, PD1}, HAVCR1 (hepatitis A virus cellular receptor 1) [NCBI Gene 26762] {aka CD365, HAVCR, HAVCR-1, KIM-1, KIM1, TIM}, MBP (myelin basic protein) [NCBI Gene 4155], IL15 (interleukin 15) [NCBI Gene 3600] {aka IL-15}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272] {aka ACEH}
- **Diseases:** postural instability (MESH:D054972), ALS (MESH:D000690), CNS demyelination (MESH:D003711), autoimmune encephalopathies (MESH:D001927), carcinogenic (MESH:D011230), Acute viral gastroenteritis (MESH:D014777), colorectal cancer (MESH:D015179), norovirus (MESH:D017250), enteroviral infections (MESH:D007239), encephalitis (MESH:D004660), neurocognitive disorders (MESH:D019965), COVID-19 (MESH:D000086382), gastrointestinal disorders (MESH:D005767), colitis (MESH:D003092), HSV (MESH:D006561), tropical spastic paraparesis (MESH:D015493), Remitting Multiple Sclerosis (MESH:D020529), Irritable Bowel Syndrome (MESH:D043183), axonal degeneration (MESH:D009410), Proinflammatory cytokines (MESH:D000080424), bacterial (MESH:D001424), Experimental Autoimmune Encephalomyelitis (MESH:D004681), Inflammatory Bowel Disease (MESH:D015212), depression (MESH:D003866), herpes simplex encephalitis (MESH:D020803), dementia (MESH:D003704), amyloid (MESH:C000718787), Lewy (MESH:D018827), constipation (MESH:D003248), hepatic encephalopathy (MESH:D006501), Parkinsonian symptoms (MESH:D010302), allergies (MESH:D004342), liver injury (MESH:D017093), viral encephalitis (MESH:D018792), HIV (MESH:D015658), fungal (MESH:D009181), MS (MESH:D009103), hepatocellular carcinoma (MESH:D006528), neurodevelopmental disorders (MESH:D002658), Rotavirus infection (MESH:D012400), necrosis (MESH:D009336), bacterial overgrowth (MESH:D001765), cold sores (MESH:D006560), Cognitive Decline (MESH:D003072), chronic (MESH:D002908), Idiopathic Rapid Eye Movement Sleep Behavior Disorder (MESH:D020187), motor impairment (MESH:D000068079), respiratory tract infections (MESH:D012141), diseases (MESH:D004194), Neurodegeneration (MESH:D019636), injury to (MESH:D014947), gastrointestinal symptoms (MESH:D012817), Japanese Encephalitis Virus (MESH:D004672), Inflammation (MESH:D007249), liver diseases (MESH:D008107), cirrhosis (MESH:D005355), nerve fiber damage (MESH:D000071075), influenza (MESH:D007251), PD (MESH:D010300), Mitochondrial Impairment (MESH:D028361)
- **Chemicals:** LPSs (-), heparan sulfate (MESH:D006497), donepezil (MESH:D000077265), BAs (MESH:D001647), L-dopa (MESH:D007980), catecholamines (MESH:D002395), butyrate (MESH:D002087), RNS (MESH:D026361), amino acid (MESH:D000596), propionate (MESH:D011422), Levodopa-Carbidopa (MESH:C009265), aducanumab (MESH:C000600266), carbohydrates (MESH:D002241), ATP (MESH:D000255), polyphenols (MESH:D059808), LPS (MESH:D008070), acetate (MESH:D000085), dopamine (MESH:D004298), tryptophan (MESH:D014364), 5-HT (MESH:D012701), glucose (MESH:D005947), SCFA (MESH:D005232), ROS (MESH:D017382), D-lactic acid (MESH:D019344), memantine (MESH:D008559), Indolepropionic Acid (MESH:C015292), acetylcholine (MESH:D000109), GABA (MESH:D005680), norepinephrine (MESH:D009638), glutamate (MESH:D018698), Lipid A (MESH:D008050)
- **Species:** Akkermansia muciniphila (species) [taxon 239935], Respiratory syncytial virus (no rank) [taxon 12814], Norovirus (genus) [taxon 142786], Streptococcus (genus) [taxon 1301], Acinetobacter calcoaceticus (species) [taxon 471], Helicobacter pylori (species) [taxon 210], Rattus norvegicus (brown rat, species) [taxon 10116], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376], Alistipes (genus) [taxon 239759], Staphylococcus aureus (species) [taxon 1280], Mycobacterium tuberculosis (species) [taxon 1773], Bacteroides (genus) [taxon 816], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Lactobacillus johnsonii (species) [taxon 33959], Lactococcus (lactic streptococci, genus) [taxon 1357], Ralstonia (genus) [taxon 48736], Clostridium (genus) [taxon 1485], Reovirus sp. (species) [taxon 10891], Homo sapiens (human, species) [taxon 9606], Enterovirus C (no rank) [taxon 138950], Faecalibacterium prausnitzii (species) [taxon 853], Shigella (genus) [taxon 620], Enterobacteriaceae (enterobacteria, family) [taxon 543], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Pseudomonas (RNA similarity group I, genus) [taxon 286], Bacillus sp. HS-V2 (species) [taxon 413320], Bacteriophage sp. (species) [taxon 38018], Rotavirus (genus) [taxon 10912], Chikungunya virus (no rank) [taxon 37124], Coronaviridae (family) [taxon 11118], West Nile virus (no rank) [taxon 11082], Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], hepatitis C virus [taxon 11103], Escherichia coli (E. coli, species) [taxon 562], Dialister (genus) [taxon 39948], Mycoplana (genus) [taxon 13159], Japanese encephalitis virus (no rank) [taxon 11072], Zika virus (no rank) [taxon 64320], Bacillus subtilis (species) [taxon 1423], Prevotella (genus) [taxon 838], Flavobacterium (genus) [taxon 237], Mus musculus (house mouse, species) [taxon 10090], Human T-cell leukemia virus type I (no rank) [taxon 11908], Haemophilus (genus) [taxon 724], Lacticaseibacillus rhamnosus GG (strain) [taxon 568703], H3N2 subtype (serotype) [taxon 119210], Chlamydia pneumoniae (species) [taxon 83558], Lactobacillus delbrueckii (species) [taxon 1584], Salmonella enterica (species) [taxon 28901], Bifidobacterium adolescentis (species) [taxon 1680], Parabacteroides distasonis (species) [taxon 823], Pseudomonadota (proteobacteria, phylum) [taxon 1224], lymphocytic choriomeningitis virus [taxon 11623], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Agathobacter rectalis (species) [taxon 39491], Enterococcus (genus) [taxon 1350], Human alphaherpesvirus 3 (Varicella-zoster virus, no rank) [taxon 10335], Mycobacterium leprae (species) [taxon 1769], Hepatitis B virus (no rank) [taxon 10407], Human immunodeficiency virus 1 (no rank) [taxon 11676]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943669/full.md

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Source: https://tomesphere.com/paper/PMC12943669