# Genomic Insights into Antimicrobial Biosynthetic Potential of Bacillus velezensis Isolated from Traditional Peruvian Tocosh

**Authors:** Dámaris Esquén Bayona, Cristian Mauricio Barreto Pinilla, Jimena Giraldo Flores, Belkys Medrano Salazar, Jesús Valencia Navarro, Joaquin Rodriguez Trelles, Kiara Flores Jiménez, Joaquim Ruiz, Roberto Alcántara, Frank Guzman Escudero

PMC · DOI: 10.3390/microorganisms14020287 · 2026-01-26

## TL;DR

This study explores the antimicrobial potential of a Bacillus velezensis strain from Peruvian tocosh, revealing its ability to produce multiple bioactive compounds.

## Contribution

The study identifies a Bacillus velezensis strain from traditional Peruvian tocosh with high NRPS production and diverse antimicrobial biosynthetic potential.

## Key findings

- The strain produces seven known antimicrobial compounds, including difficidin and bacillomycin D.
- Antimicrobial activity was confirmed against S. aureus strains in vitro.
- Key biosynthetic genes are expressed during the exponential growth phase.

## Abstract

Tocosh, a traditional Peruvian fermented potato product, is known for its health-promoting properties, including its antioxidant, anti-inflammatory, probiotic, and antibiotic effects, which have popularized its consumption, particularly in rural areas. To gain a better understanding of its antimicrobial properties, this study aimed to perform a comprehensive whole-genome analysis and functional assessment of the Bacillus velezensis TCSH0001 strain isolated from tocosh. The isolate was identified through whole-genome sequencing using the MinION nanopore platform. AntiSMASH analysis revealed nine biosynthetic gene clusters (BGCs) potentially responsible for producing secondary metabolites with antibiotic potential. Notably, seven BGCs showed a 100% similarity to known clusters involved in the biosynthesis of polyketide synthases (PKSs) and non-ribosomal peptides (NRPSs), including difficidin, bacillibactin, bacilysin, macrolactin H, bacillaene, fengycin, and bacillomycin D. In vitro analysis revealed antimicrobial activity against S. aureus strains. In addition, RT-qPCR indicated that the expression of the baeJ (bacillaene), bmyA (bacillomycin D), and pks2A (macrolactin H) occurs predominantly during the exponential growth phase. Our results suggest that this B. velezensis strain has the capacity to produce a diverse array of bioactive compounds, supporting the traditional use of tocosh as a natural antimicrobial agent, and revealing the potential of the strain as a high NRPS producer.

## Linked entities

- **Chemicals:** difficidin (PubChem CID 125281), bacillibactin (PubChem CID 125349), bacilysin (PubChem CID 86583338), macrolactin H (PubChem CID 9978474), bacillaene (PubChem CID 25144999), fengycin (PubChem CID 443591), bacillomycin D (PubChem CID 139585475)
- **Species:** Bacillus velezensis (taxon 492670)

## Full-text entities

- **Diseases:** infection (MESH:D007239), toxicity (MESH:D064420), BGCs (MESH:D003027), fungal (MESH:D009181), CDS (MESH:D010855), cancer (MESH:D009369), diabetic (MESH:D003920), inflammatory (MESH:D007249), injury to (MESH:D014947)
- **Chemicals:** dUTP (MESH:C027078), amino acid (MESH:D000596), macrolide (MESH:D018942), ergosterol (MESH:D004875), pleuromutilin (MESH:C004262), starches (MESH:D013213), Macrolactins (MESH:C532687), ARG (MESH:D001120), carbohydrate (MESH:D002241), MIN114 (-), Bacilysin (MESH:C006674), streptogramin A (MESH:D025364), penicillin (MESH:D010406), glycerol (MESH:D005990), H+ (MESH:D006859), bacitracin (MESH:D001414), glucose (MESH:D005947), reactive oxygen species (MESH:D017382), Difficidin (MESH:C054843), lipopeptide (MESH:D055666), dTTP (MESH:C024157), sterols (MESH:D013261), Bacillibactin (MESH:C430721), Bacillaene (MESH:C096634), agar (MESH:D000362), colibactin (MESH:C569566), lincosamide (MESH:D055231), bacillomycin (MESH:C020977), oxazolidinone (MESH:D023303), fengycin (MESH:C049972), methicillin (MESH:D008712), polyketide (MESH:D061065), dipeptide (MESH:D004151), water (MESH:D014867), acetyl-CoA (MESH:D000105), iron (MESH:D007501), peptide (MESH:D010455)
- **Species:** Staphylococcus aureus (species) [taxon 1280], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Clostridium (genus) [taxon 1485], Myxococcus xanthus (species) [taxon 34], Homo sapiens (human, species) [taxon 9606], Solanum lycopersicum (tomato, species) [taxon 4081], Solanum tuberosum subsp. andigenum (subspecies) [taxon 80418], Solanum tuberosum (potatoes, species) [taxon 4113], Escherichia coli ATCC 25922 (strain) [taxon 1322345], Dermacoccus sp. 103 (species) [taxon 1043598], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Ralstonia solanacearum (species) [taxon 305], Prevotella (genus) [taxon 838], Bacillus amyloliquefaciens (species) [taxon 1390], Bacillus velezensis FZB42 (strain) [taxon 326423], Lactobacillus (genus) [taxon 1578], Pyricularia grisea (species) [taxon 148305], Bacillus subtilis (species) [taxon 1423], Bacillus cereus (species) [taxon 1396], Escherichia coli (E. coli, species) [taxon 562], Human immunodeficiency virus 1 (no rank) [taxon 11676], Bacillus sp. (in: firmicutes) (species) [taxon 1409], Phytophthora sojae (species) [taxon 67593], Campylobacter jejuni (species) [taxon 197]
- **Cell lines:** FLO — Homo sapiens (Human), Barrett adenocarcinoma, Cancer cell line (CVCL_2045), ATCC 25922 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943656/full.md

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Source: https://tomesphere.com/paper/PMC12943656