# Targeting Microorganisms in Lignocellulosic Biomass to Produce Biogas and Ensure Sanitation and Hygiene

**Authors:** Christy Echakachi Manyi-Loh, Stephen Loh Tangwe, Ryk Lues

PMC · DOI: 10.3390/microorganisms14020299 · 2026-01-27

## TL;DR

This paper reviews how anaerobic digestion of organic waste can produce biogas, sanitize waste, and create biofertilizer, offering a sustainable solution to waste management and energy needs.

## Contribution

The paper provides a comprehensive synthesis of anaerobic digestion's role in energy production, sanitation, and waste management across multiple studies and regions.

## Key findings

- Anaerobic digestion effectively converts lignocellulosic waste into biogas and biofertilizer while reducing microbial contamination.
- The process inactivates harmful bacteria and antibiotic resistance genes, improving waste safety for land application.
- Variations in microbial susceptibility and environmental factors influence digestion efficiency and sanitization outcomes.

## Abstract

Microbial components are part of the composition of all waste, including lignocellulosic biomass (e.g., agricultural, domestic, industrial, and municipal wastes) generated via human activities. If little attention is given to these wastes or if they are not adequately managed, they tend to end up in the environment (soil, water, and farmland), decomposing naturally through microbial activities, producing greenhouse gases, causing eutrophication, preventing sunlight penetration, and depleting oxygen in the water. Several treatment methods are applicable to these wastes. However, anaerobic digestion is presented as the best option to properly treat the waste. It is regarded as the best technique to achieve sustainable energy development in both developing and developed countries. During anaerobic digestion, the organic matter in the waste is converted via the concerted activities of microbes belonging to different trophic levels, in the absence of oxygen, to yield biogas (renewable energy), bio-fertiliser, and sanitisation of the waste, rendering it better and safer for human handling. Varying levels of loss of bacterial viability and their antibiotic-resistance genes are observed with this process, as bacteria differ in susceptibility to temperature, pH, nutrient scarcity, and the presence of antimicrobials. Anaerobic digestion of agricultural residues and the immediate processing (post-treatment) of the digestate help to stabilise the digestate, making it safe for land applications, tackling waste management, and protecting food chains from contamination, in addition to the environment. This review focuses on the anaerobic digestion of lignocellulosic biomass, yielding biogas as energy, alongside sanitising the wastes by inactivating microbial components found therein, therefore reducing the contamination potential of the effluent or digestate discharged from the biodigester following the process. Several findings registered by different researchers through different studies performed in different countries under different scenarios while employing varying methods have been assembled in a chronological fashion to emphasise similarities and divergences or variations that deepen knowledge pertaining to the significance of the anaerobic digestion process in terms of the microbial interactions responsible for producing energy, addressing sanitisation and hygiene crisis, and the post-treatment of the digestate to ensure its use as biofertiliser. In other words, it is a comprehensive review that synthesises knowledge from multiple fields covering comparative aspects of anaerobic digestion in terms of sanitation, hygiene, and energy production and consolidates it in a single document to present and address the problem of waste management through anaerobic digestion technology.

## Full-text entities

- **Genes:** SERPINA2 (serpin family A member 2 (gene/pseudogene)) [NCBI Gene 390502] {aka ARGS, ATR, PIL, SERPINA2P, psiATR}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, ABL2 (ABL proto-oncogene 2, non-receptor tyrosine kinase) [NCBI Gene 27] {aka ABLL, ARG}, DHFR (dihydrofolate reductase) [NCBI Gene 1719] {aka DHFR1, DYR}, APEH (acylaminoacyl-peptide hydrolase) [NCBI Gene 327] {aka AARE, ACPH, APH, D3F15S2, D3S48E, DNF15S2}
- **Diseases:** enteritis (MESH:D004751), botulism (MESH:D001906), stomach pain (MESH:D013272), inflammatory bacillary dysentery (MESH:D004405), stillbirths (MESH:D050497), bacterial infections (MESH:D001424), organic (MESH:D000092124), endocarditis (MESH:D004696), gastrointestinal tract diseases (MESH:D005770), zoonotic diseases (MESH:D015047), osteomyelitis (MESH:D010019), gangrene (MESH:D005734), enteric fever (MESH:D014435), necrosis (MESH:D009336), sepsis (MESH:D018805), infectious (MESH:D003141), dysentery (MESH:D004403), malnutrition (MESH:D044342), death (MESH:D003643), backache (MESH:D001416), sudden death (MESH:D003645), haemolytic uraemic syndrome (MESH:D006463), encephalitis (MESH:D004660), brain infection (MESH:D007239), abortions (MESH:D000026), gastrointestinal diseases (MESH:D005767), colitis (MESH:D003092), dehydration (MESH:D003681), urinary tract infections (MESH:D014552), toxicity (MESH:D064420), dizziness (MESH:D004244), respiratory failure (MESH:D012131), AD (MESH:D004828), Cholera (MESH:D002771), nausea (MESH:D009325), bird flu (MESH:D001715), Diarrhoea (MESH:D003967), pneumonia (MESH:D011014), abdominal cramps (MESH:D003085), diarrhoeal-related diseases (MESH:D000077733), fever (MESH:D005334), Food poisoning (MESH:D005517), enterotoxemia (MESH:D004767), helminthiasis (MESH:D006373), enterocolitis (MESH:D004760), mastitis (MESH:D008413), Y. enterocolitica (MESH:D015009), systemic diseases (MESH:D034721), trace element deficiency (MESH:C565217), vomiting (MESH:D014839), injury to (MESH:D014947), diarrhoeal disease (MESH:D004194), inflammation (MESH:D007249), gastrointestinal symptoms (MESH:D012817), headache (MESH:D006261), avian flu (MESH:D005585), gastroenteritis (MESH:D005759), emetic syndrome (MESH:D013577), kidney failure (MESH:D051437), muscle weakness (MESH:D018908)
- **Chemicals:** lignin (MESH:D008031), CO2 (MESH:D002245), Co (MESH:D003035), butyric acid (MESH:D020148), polylactic acid (MESH:C033616), biochar (MESH:C540010), lipids (MESH:D008055), MgO (MESH:D008277), OH- (MESH:C031356), W (MESH:D014414), beta-lactam (MESH:D047090), acetate (MESH:D000085), Cereulide (MESH:C089294), lignocellulose (MESH:C036909), alcohols (MESH:D000438), polyethylene terephthalate (MESH:D011093), H+ (MESH:D006859), cellulose (MESH:D002482), Mo (MESH:D008982), Mn (MESH:D008345), C6H12O6 (MESH:D005947), chloramphenicol (MESH:D002701), Mg (MESH:D008274), VFA (MESH:D005232), heavy metals (MESH:D019216), graphite (MESH:D006108), hydrogen peroxide (MESH:D006861), ozone (MESH:D010126), LCH4 (-), sulphur (MESH:D013455), H2S (MESH:D006862), humic acid (MESH:D006812), K (MESH:D011188), hydrogen ion (MESH:D011522), tetracycline (MESH:D013752), streptogramins (MESH:D025361), dfrA (MESH:C044319), butyrate (MESH:D002087), Ca (OH)2 (MESH:D002126), trimethoprim (MESH:D014295), carbon nanotubes (MESH:D037742), zeolite (MESH:D017641), macrolide (MESH:D018942), amino acids (MESH:D000596), Propionate (MESH:D011422), quinolone (MESH:D015363), fatty acids (MESH:D005227), oil (MESH:D009821), carbohydrate (MESH:D002241), Se (MESH:D012643), water (MESH:D014867), GHG (MESH:D000074382), nitrous acid (MESH:D009608), VS (MESH:D014639), Fe (MESH:D007501), Propionic acid (MESH:C029658), tetracyclines (MESH:D013754), isoprenoids (MESH:D013729), Fe2O3 (MESH:C000499), cml (MESH:C048496)
- **Species:** Brassica oleracea var. botrytis (cauliflower, varietas) [taxon 3715], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Dokdonella (genus) [taxon 323413], Desulfobacterium (genus) [taxon 2295], Ehrlichia sp. IE-C (species) [taxon 371764], Methanocorpusculum (genus) [taxon 2192], Proteiniborus (genus) [taxon 415014], Proteiniphilum (genus) [taxon 294702], Desulfonema (genus) [taxon 45654], PX clade (clade) [taxon 569578], Bos taurus (bovine, species) [taxon 9913], Pseudomonas (RNA similarity group I, genus) [taxon 286], H5N1 subtype (serotype) [taxon 102793], Gallus gallus (bantam, species) [taxon 9031], Bacteriophage sp. (species) [taxon 38018], Ahniella (genus) [taxon 2233801], Methanothrix (genus) [taxon 2222], Macellibacteroides (genus) [taxon 1159323], Methanoculleus (genus) [taxon 45989], Bacteroidia (class) [taxon 200643], Alicycliphilus (genus) [taxon 201096], Desulfobacter (genus) [taxon 2289], Cryptosporidium parvum (species) [taxon 5807], Methanosarcina (genus) [taxon 2207], Desulfobulbus (genus) [taxon 893], Methanopyrales (order) [taxon 68985], Desulfococcus (genus) [taxon 896], Methanosarcinales (order) [taxon 94695], Methanomicrobiales (order) [taxon 2191], Listeria monocytogenes (species) [taxon 1639], Human immunodeficiency virus (species) [taxon 12721], Manihot esculenta (cassava, species) [taxon 3983], Methanobacterium (genus) [taxon 2160], Thauera (genus) [taxon 33057], Staphylococcus aureus (species) [taxon 1280], Vibrio cholerae (species) [taxon 666], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Desulfotomaculum (genus) [taxon 1562], Methanomassiliicoccus (genus) [taxon 1080709], Methanomassiliicoccales (order) [taxon 1235850], Giardia duodenalis (species) [taxon 5741], Clostridioides difficile (species) [taxon 1496], Homo sapiens (human, species) [taxon 9606], H2N2 subtype (serotype) [taxon 114729], Desulfosarcina (genus) [taxon 2299], Campylobacter coli (species) [taxon 195], Desulfovibrio (genus) [taxon 872], Brassica oleracea (wild cabbage, species) [taxon 3712], Enterococcus faecalis (species) [taxon 1351], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Methanobacteriales (order) [taxon 2158], Methanobrevibacter (genus) [taxon 2172], Campylobacter jejuni (species) [taxon 197], Panthera leo (lion, species) [taxon 9689], Methanothermobacter (genus) [taxon 145260], Human immunodeficiency virus 1 (no rank) [taxon 11676], Sus scrofa (pig, species) [taxon 9823], Shigella flexneri (species) [taxon 623], Methanococcales (order) [taxon 2182], H1N1 subtype (serotype) [taxon 114727]

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943641/full.md

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Source: https://tomesphere.com/paper/PMC12943641