# N-Benzyl-6-Chloro-4-Hydroxy-2-Quinolone-3-Carboxamides: Synthesis, Computational Studies, and Biological Investigation as Anticancer Agents

**Authors:** Sara Jamal Meknas, Eveen Al-Shalabi, Rima Hajjo, Sanaa K. Bardaweel, Ghassan Abushaikha, Kamal Sweidan, Swapnaa Balaji, Amit K. Tiwari, Haizhen A. Zhong, Dima A. Sabbah

PMC · DOI: 10.3390/molecules31040655 · 2026-02-13

## TL;DR

Researchers synthesized and tested new quinolone compounds that show potential as anticancer agents, particularly against colon cancer cells.

## Contribution

The study introduces new N-benzyl-6-chloro-4-hydroxy-2-quinolone-3-carboxamide derivatives with demonstrated cytotoxicity against colon cancer cells.

## Key findings

- Five derivatives showed distinct cytotoxicity against HCT-116 cells with IC50 values ranging from 72.0 to 112.0 µM.
- Cheminformatics and docking studies revealed drug-like properties and binding interactions with PI3Kα, suggesting improved efficacy and selectivity.
- The compounds show therapeutic promise for targeting cancer-specific pathways, particularly in colorectal cancer.

## Abstract

Cancer remains the second leading cause of death worldwide, highlighting the urgent need for novel therapeutic agents. In this work, twenty derivatives of N-benzyl-6-chloro-4-hydroxy-2-quinolone-3-carboxamides were synthesized and spectroscopically analyzed using FT-IR, NMR (1H and 13C), and elemental analysis. Substitution of benzyl moiety with o-CH3 (8), p-OCH3 (10), m-CH3 (18), p-CH3 (19), and p-CF3 (21) demonstrated three-fold distinct cytotoxicity against human colon cancer (HCT-116) cells with IC50s of 72.0, 100.0–112.0 µM. The cheminformatics calculations disclosed that the analogues possess diverse physicochemical properties and invariable predictions across six drug-likeness scoring models, supporting their potential cytotoxicity profile against colorectal cancer cell lines (Caco-2 and HCT-116). The docking studies against both wild-type and mutant PI3Kα clarified binding interactions, implying that particular functionalities improve efficacy and selectivity. This study provides further evidence for the therapeutic promise of quinolones in targeting cancer-specific pathways and expedites the process for developing potent anticancer agents.

## Linked entities

- **Proteins:** Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1)
- **Diseases:** colon cancer (MONDO:0002032), colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, ESR2 (estrogen receptor 2) [NCBI Gene 2100] {aka ER-BETA, ESR-BETA, ESRB, ESTRB, Erb, NR3A2}, MMUT (methylmalonyl-CoA mutase) [NCBI Gene 4594] {aka MCM, MUT}, MET (MET proto-oncogene, receptor tyrosine kinase) [NCBI Gene 4233] {aka AUTS9, DA11, DFNB97, HGFR, RCCP2, c-Met}, AR (androgen receptor) [NCBI Gene 367] {aka AIS, AR8, DHTR, HPCX3, HUMARA, HYSP1}, PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) [NCBI Gene 5564] {aka AMPK, HAMPKb}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, KRT6A (keratin 6A) [NCBI Gene 3853] {aka CK-6C, CK-6E, CK6A, CK6C, CK6D, K6A}, HDAC1 (histone deacetylase 1) [NCBI Gene 3065] {aka GON-10, HD1, KDAC1, RPD3, RPD3L1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, GDF15 (growth differentiation factor 15) [NCBI Gene 9518] {aka GDF-15, HG, MIC-1, MIC1, NAG-1, PDF}, HDAC3 (histone deacetylase 3) [NCBI Gene 8841] {aka HD3, KDAC3, RPD3, RPD3-2}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, HDAC2 (histone deacetylase 2) [NCBI Gene 3066] {aka HD2, KDAC2, RPD3, YAF1}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}, PRKCA (protein kinase C alpha) [NCBI Gene 5578] {aka AAG6, PKC-alpha, PKCA, PKCI+/-, PKCalpha}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, FAS (Fas cell surface death receptor) [NCBI Gene 355] {aka ALPS1A, APO-1, APT1, CD95, FAS1, FASTM}, CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468] {aka CIMT1, FPLD3, GLM1, NR1C3, PPARG1, PPARG2}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, CXCL12 (C-X-C motif chemokine ligand 12) [NCBI Gene 6387] {aka IRH, PBSF, SCYB12, SDF1, TLSF, TPAR1}, CPD (carboxypeptidase D) [NCBI Gene 1362] {aka GP180}
- **Diseases:** Prostate cancer (MESH:D011471), injury to (MESH:D014947), Cancer (MESH:D009369), carcinogenesis (MESH:D063646), obesity (MESH:D009765), colon carcinoma (MESH:D003110), hypoxia (MESH:D000860), colon cancer (MESH:D015179), carcinogenic (MESH:D011230), death (MESH:D003643), metastasis (MESH:D009362), tumor suppressor gene (OMIM:601308), Cytotoxicity (MESH:D064420), necrotic (MESH:D009336)
- **Chemicals:** O (MESH:D010100), Br (MESH:D001966), n-hexane (MESH:C026385), 4-methylbenzylamine (MESH:C063400), 3H (MESH:D014316), CH3OH (MESH:D000432), benzylamines (MESH:D001596), 4-nitrobenzylamine (MESH:C048768), sodium ethoxide (MESH:C098088), streptomycin (MESH:D013307), C (MESH:D002244), EDTA (MESH:D004492), N (MESH:D009584), NO2 (MESH:D009585), 4-fluorobenzylamine (MESH:C114760), petroleum ether (MESH:C004544), 4-methoxybenzylamine (MESH:C091000), F (MESH:D005461), m-NO2 (MESH:C016552), amide (MESH:D000577), o-NO2 (MESH:C038131), water (MESH:D014867), 13C (MESH:C000615229), C2H5OH (MESH:D000431), HCl (MESH:D006851), potassium bromide (MESH:C039004), calcium chloride (MESH:D002122), penicillin (MESH:D010406), DOX (MESH:D004317), silica (MESH:D012822), pyridine (MESH:C023666), Propidium Iodide (MESH:D011419), ethyl acetate (MESH:C007650), NaHCO3 (MESH:D017693), -CH3 (-), 2H (MESH:D003903), aluminum (MESH:D000535), acetone (MESH:D000096), oil (MESH:D009821), quinolone (MESH:D015363), MTT (MESH:C070243), sodium sulphate (MESH:C012036), DMF (MESH:D004126), THF (MESH:C018674), CHCl3 (MESH:D002725), CO2 (MESH:D002245), LY294002 (MESH:C085911), Tasquinimod (MESH:C516109), Linomide (MESH:C045282), Ethyl anthranilate (MESH:C000606933), anthranilic acid (MESH:C031385), diethyl malonate (MESH:C498810), Ar (MESH:D001128), H2SO4 (MESH:C033158), glucose (MESH:D005947), DMSO (MESH:D004121), alcohol (MESH:D000438), H (MESH:D006859), 3-nitrobenzylamine (MESH:C089016)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** H1047R, C) for 72, C) for 5
- **Cell lines:** HCT-116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), PCS-201-012 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_WT12), Caco-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025)

## Figures

30 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943595/full.md

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Source: https://tomesphere.com/paper/PMC12943595