# Deciphering the Microbe–Metabolite Network in Irradiated Chicken Breast Meat: Multi-Omics Characterization of Differential Quality Response Mechanisms to Stepwise Irradiation Doses

**Authors:** Jincheng Han, Rong Bai, Jing Xi, Aitmagambetova Madina, Wu Ding

PMC · DOI: 10.3390/microorganisms14020405 · 2026-02-09

## TL;DR

This study explores how irradiation affects the microbial and metabolic makeup of chicken breast meat, revealing how different doses impact meat quality and microbial communities.

## Contribution

The study introduces a multi-omics approach to uncover how stepwise irradiation doses alter microbial and metabolite networks in chicken meat.

## Key findings

- Irradiation significantly altered the diversity of chicken meat microbiota.
- Low irradiation doses (≤4 kGy) had a stronger effect on microbial diversity and metabolite levels.
- Metabolites were more strongly linked to meat quality attributes than microbial diversity.

## Abstract

In this study, chicken breast samples were exposed to electron beam irradiation at doses of 0, 2, 4, 6, 8, and 10 kGy and analyzed using 16S rRNA sequencing and untargeted metabolomics (LC-MS/MS). The results demonstrated that irradiation significantly altered the diversity of the chicken meat microbiota. Psychrobacter and Chryseobacterium exhibited dose-dependent decreases, whereas Stenotrophomonas and Acinetobacter were identified as irradiation-associated characteristic genera. Functional prediction of these tolerant microbes indicated that growth-related pathways remained active. The irradiation disrupted the metabolic network, resulting in a disordered structure, and the core microbial communities were strongly correlated with amino acid, carbohydrate, alcohol, and lipid metabolism. Partial least squares structural equation modeling indicated that, at low doses (≤4 kGy), irradiation had a significant effect on microbial diversity and metabolite levels, whereas these effects diminished at higher doses. Microbial diversity had no significant effect on meat color or texture, while metabolites were significantly associated with these quality attributes.

## Linked entities

- **Species:** Psychrobacter (taxon 497), Chryseobacterium (taxon 59732), Stenotrophomonas (taxon 40323), Acinetobacter (taxon 469)

## Full-text entities

- **Diseases:** bacterial infections (MESH:D001424), Campylobacter infection (MESH:D002169), injury to (MESH:D014947)
- **Chemicals:** 2-aminoadipic acid (MESH:D015074), acetoacetyl-CoA. (MESH:C010667), Amino acid (MESH:D000596), nitrite (MESH:D009573), starch (MESH:D013213), tannins (MESH:D013634), amines (MESH:D000588), TCA (MESH:D014238), carbohydrate (MESH:D002241), FAs (MESH:D005227), pipecolic acid (MESH:C031345), Aminoadipate (-), Bile acids (MESH:D001647), H2S (MESH:D006862), sulfur (MESH:D013455), tryptamines (MESH:D014363), unsaturated fatty acids (MESH:D005231), Aminoacyl-tRNA (MESH:D012346), GL (MESH:D005990), Carnitine (MESH:D002331), L-lysine (MESH:D008239), heterocyclic compounds (MESH:D006571), alcohol (MESH:D000438), tryptophan (MESH:D014364), flavonoids (MESH:D005419), formaldehyde (MESH:D005557), ROS (MESH:D017382), L-threonine (MESH:D013912), ATP (MESH:D000255), 5,8,11-eicosatrienoic acid (MESH:C010944), GSH (MESH:D005978), lipid (MESH:D008055), polypropylene (MESH:D011126), agarose (MESH:D012685), saccharopine (MESH:C100169), nitrogen (MESH:D009584), inosine monophosphate (MESH:D007291), cholines (MESH:D002794), agar (MESH:D000362), ketones (MESH:D007659), esters (MESH:D004952), glutaryl-CoA (MESH:C015901), acetonitrile (MESH:C032159), carbon (MESH:D002244), saline (MESH:D012965), methanol (MESH:D000432), GPs (MESH:D020404), formic acid (MESH:C030544), oxygen (MESH:D010100), glycolipids (MESH:D006017), glutamate (MESH:D018698), nitrosamines (MESH:D009602), aldehydes (MESH:D000447), cysteinylglycine (MESH:C028505), phospholipid (MESH:D010743), benzene (MESH:D001554), water (MESH:D014867), nucleotide (MESH:D009711), acetyl-CoA (MESH:D000105), phenolic acids (MESH:C017616)
- **Species:** Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Homo sapiens (human, species) [taxon 9606], Bacteroidota (Bacteroides-Cytophaga-Flexibacter group, phylum) [taxon 976], Gallus gallus (bantam, species) [taxon 9031], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Bos taurus (bovine, species) [taxon 9913], Stenotrophomonas (genus) [taxon 40323], Acinetobacter (genus) [taxon 469], Acipenser sturio (sturgeon, species) [taxon 61674], Sus scrofa (pig, species) [taxon 9823], Chryseobacterium (genus) [taxon 59732], Actinomycetota (actinobacteria, phylum) [taxon 201174], Psychrobacter (genus) [taxon 497], Cyanobacteriota (blue-green algae, phylum) [taxon 1117], Pseudomonadota (proteobacteria, phylum) [taxon 1224]

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943483/full.md

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Source: https://tomesphere.com/paper/PMC12943483