# Implementation of SARS-CoV-2 Wastewater Surveillance Systems in Germany—Pilot Study in the Federal State of Thuringia

**Authors:** Felix Kaller, Gloria M. Kohlhepp, Sarah Haeusser, Sara Wullenkord, Katarina Reichel-Kühl, Anna Pfannstiel, Robert Möller, Jennifer Führ, Carlos Chillon Geck, Yousuf Al-Hakim, Andrea Lück, Norbert Kreuzinger, Johannes Pinnekamp, Mathias W. Pletz, Claudia Klümper, Silvio Beier, Kay Smarsly

PMC · DOI: 10.3390/microorganisms14020277 · Microorganisms · 2026-01-24

## TL;DR

This paper describes a pilot study in Thuringia, Germany, to implement wastewater surveillance for tracking SARS-CoV-2 and discusses its potential as a public health tool.

## Contribution

The study presents a practical implementation framework for wastewater surveillance in a German federal state.

## Key findings

- A surveillance system for SARS-CoV-2 RNA was implemented in 23 wastewater treatment plants across Thuringia.
- The study outlines logistical and planning aspects for integrating wastewater monitoring into public health systems.
- Potential barriers and opportunities for IT and AI integration in wastewater surveillance were explored.

## Abstract

Since the COVID-19 pandemic, wastewater monitoring has become an additional tool in the surveillance of infectious diseases. Many EU countries put wastewater surveillance systems (WSS) in place to track SARS-CoV-2 and its variants and other pathogens, such as the influenza virus or Respiratory syncytial virus (RSV). In Germany, several research and pilot projects funded by the EU, the Federal Ministry of Education and Research, the Federal Ministry of Health, and projects at Federal State level have been launched in the last four years. In Germany, wastewater monitoring was not implemented as a public health tool before the COVID-19 pandemic, but in September 2022, it has been legally determined in the German infection protection act (Infektionsschutzgesetz, IfSG). As Germany is a federal state, competencies in epidemic management partly belong to the 16 federal states (“Länder”). In the federal states, the local health authorities at the county (“Kreise”) level also have specific risk management and communication competencies. Furthermore, WSS has been incorporated into the revised Urban Wastewater Treatment Directive (EU) 2024/3019. For this reason, the federal states and local health authorities play a pivotal role in successfully implementing wastewater monitoring as a supplementary component of disease surveillance in Germany. Between November 2021 and August 2022, the federal state of Thuringia, Germany, supported a pilot study to implement a surveillance system for SARS-CoV-2-RNA in wastewater of 23 wastewater treatment plants in 17 counties in Thuringia. Here, we describe the study design and the system behind the logistics and the planning, and we provide an overview of the options for involving the public health service. Furthermore, the possibilities for IT concepts and approaches to innovative AI solutions are shown. We also aim to explore the feasibility and potential barriers to further implementing wastewater surveillance as a supplementary public health tool in Thuringia.

## Linked entities

- **Diseases:** COVID-19 (MONDO:0100096), influenza (MONDO:0005812)

## Full-text entities

- **Diseases:** Infection (MESH:D007239), COVID-19 (MESH:D000086382), death (MESH:D003643), communicable diseases (MESH:D003141), injury to (MESH:D014947)
- **Chemicals:** MCE (-), ammonium (MESH:D064751), phosphate (MESH:D010710), oxygen (MESH:D010100), saline (MESH:D012965), Water (MESH:D014867)
- **Species:** Enterovirus C (no rank) [taxon 138950], Homo sapiens (human, species) [taxon 9606], Respiratory syncytial virus (no rank) [taxon 12814], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049]

## Full text

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## Figures

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## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943387/full.md

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Source: https://tomesphere.com/paper/PMC12943387