# Long-Term Associations of Early-Life Human Milk Oligosaccharide Intake with Allergic Disease Development and Gut Microbiota Profiles in 5-Year-Old Children

**Authors:** Ruixin Kou, Che Pan, Xiaolong Xing, Jin Wang, Sinéad T. Morrin, Rachael H. Buck, Xiang Li, Yingyi Mao, Shuo Wang

PMC · DOI: 10.3390/nu18040624 · Nutrients · 2026-02-13

## TL;DR

This study shows that higher intake of human milk oligosaccharides in early life may reduce allergy risk in children by shaping gut microbiota.

## Contribution

The study reveals novel long-term associations between early-life HMO intake and gut microbiota profiles linked to allergy development.

## Key findings

- Higher HMO intake is associated with reduced allergy incidence in 5-year-olds.
- Specific HMOs correlate with gut microbiota changes, including increased Bifidobacterium and propionic acid levels.
- Bifidobacterium adolescentis shows strong correlation with 2′-fucosyllactose in early life.

## Abstract

Background: Based on our extensive cohort study, the Maternal Nutrition and Infant Investigation (MUAI), this research investigated the associations between human milk oligosaccharide (HMO) intake during the postnatal period and allergic disease development and gut microbiome composition in early childhood through long-term follow-up. Methods: Human breast milk (HBM) samples at five lactation stages and fecal samples of infants and young children were collected. Children aged 5 years included in this study were categorized into allergic and non-allergic groups via standardized allergen testing. Results: The findings indicated that higher HMO intake levels across five distinct lactation periods may be linked to a reduced incidence of allergies in children. The consumption of six major structurally representative HMOs was significantly associated with alterations in the gut microbiota profiles of young children. Moreover, there were notable differences in gut microbiota composition between allergic and non-allergic children. Specifically, beneficial bacteria such as Bifidobacterium, Akkermansia, and Ruminococcus were significantly enriched, in addition to the levels of metabolite propionic acid, a beneficial short-chain fatty acid, which were notably higher in the non-allergic group. To further validate the relationship between Bifidobacterium abundance and early HMO intake, the analysis revealed that a differential strain biomarker, Bifidobacterium adolescentis (B. adolescentis), exhibited significant correlations with specific HMOs at different lactation stages, particularly showing a strong positive correlation with 2′-fucosyllactose (2′-FL) content. Conclusions: These findings suggest that early-life HMO intake is associated with long-term differences in allergic outcomes, potentially through modulation of gut microbiota composition, particularly the enrichment of B. adolescentis.

## Linked entities

- **Chemicals:** 2′-fucosyllactose (PubChem CID 170484), propionic acid (PubChem CID 1032)
- **Diseases:** allergic disease (MONDO:0005271)
- **Species:** Bifidobacterium (taxon 1678), Akkermansia (taxon 239934), Ruminococcus (taxon 1263), Bifidobacterium adolescentis (taxon 1680)

## Full-text entities

- **Genes:** FUT2 (fucosyltransferase 2 (H blood group)) [NCBI Gene 2524] {aka B12QTL1, SE, SEC2, Se2, sej}, FUT3 (fucosyltransferase 3 (Lewis blood group)) [NCBI Gene 2525] {aka CD174, FT3B, FucT-III, LE, Les}, CAT (catalase) [NCBI Gene 847]
- **Diseases:** chronic diseases (MESH:D002908), infectious diseases (MESH:D003141), acute toxicity (MESH:D000208), fever (MESH:D005334), AD (MESH:D003876), immune dysregulation (OMIM:614878), systemic (MESH:D015619), diarrhea (MESH:D003967), Allergic disease (MESH:D004342), obesity (MESH:D009765), IBD (MESH:D015212), irritable bowel syndrome (MESH:D043183), AAS (MESH:D001249), FA (MESH:D005512), MUAI (MESH:D007228), colitis (MESH:D003092), CMPA (MESH:D016269), allergic symptoms (MESH:D063926), infection (MESH:D007239), eczema (MESH:D004485), respiratory infections (MESH:D012141), mucosal diseases (MESH:D004194), injury to (MESH:D014947), caries (MESH:D003731), inflammation (MESH:D007249)
- **Chemicals:** SCFA (MESH:D005232), ether (MESH:D004986), isocaproic acid (MESH:C034527), LNT (MESH:C013084), 6'-Sialyllactose (MESH:C403777), propionic acid (MESH:C029658), 3-Fucosyllactose (MESH:C035714), lipids (MESH:D008055), butyric acid (MESH:D020148), 2'-FL (MESH:C031420), polyphenols (MESH:D059808), LNFP II (MESH:C041762), 3'-SL (MESH:C421467), Se (MESH:D012643), phosphoric acid (MESH:C030242), amino acid (MESH:D000596), sulfonamides (MESH:D013449), lactose (MESH:D007785), penicillin (MESH:D010406), Oligosaccharide (MESH:D009844), 3-FL (-)
- **Species:** Drosophila melanogaster (fruit fly, species) [taxon 7227], Actinomycetota (actinobacteria, phylum) [taxon 201174], gut metagenome (species) [taxon 749906], Ruminococcus (genus) [taxon 1263], Roseburia (genus) [taxon 841], Akkermansia (genus) [taxon 239934], Bos taurus (bovine, species) [taxon 9913], Campylobacter jejuni (species) [taxon 197], Bifidobacterium animalis (species) [taxon 28025], Penicillium chrysogenum (species) [taxon 5076], Shigella (genus) [taxon 620], Bifidobacterium adolescentis (species) [taxon 1680], Cladosporium (genus) [taxon 5498], Alternaria sect. Alternaria (section) [taxon 2499237], Bifidobacterium bifidum (species) [taxon 1681], Homo sapiens (human, species) [taxon 9606], Aspergillus niger (species) [taxon 5061], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Mus musculus (house mouse, species) [taxon 10090], Bifidobacterium dentium (species) [taxon 1689], Fusobacterium (genus) [taxon 848], Fusobacteriota (phylum) [taxon 32066], Escherichia coli (E. coli, species) [taxon 562], Megamonas (genus) [taxon 158846], Listeria monocytogenes (species) [taxon 1639], Bifidobacterium longum (species) [taxon 216816], Streptococcus mutans (species) [taxon 1309]

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## References

55 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943307/full.md

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Source: https://tomesphere.com/paper/PMC12943307