# Harnessing Endophytic Fungi as a Sustainable Source of Novel Anticancer Agents: Opportunities, Challenges, and Future Directions

**Authors:** Elly Lowen, Simon E. Moulton, Enzo A. Palombo, Faith Kwa, Bita Zaferanloo

PMC · DOI: 10.3390/molecules31040693 · Molecules · 2026-02-17

## TL;DR

Endophytic fungi offer a sustainable source of diverse anticancer compounds that could overcome current therapy limitations.

## Contribution

This paper reviews endophytic fungi as a novel source of anticancer agents with multi-target mechanisms and reduced toxicity.

## Key findings

- Endophytic fungi produce diverse metabolites that disrupt cancer pathways and induce apoptosis.
- Strategies like OSMAC and synthetic biology can enhance discovery and yield of bioactive compounds.
- Endophyte-derived agents show potential for scalable and eco-friendly cancer treatment.

## Abstract

Despite significant advances in oncology, current cancer therapies remain constrained by toxicity, resistance, and limited selectivity. Endophytic fungi symbiotic microorganisms inhabiting plant tissues represent a sustainable and underexplored source of structurally diverse anticancer metabolites. These include alkaloids, terpenoids, polyketides, and peptides that disrupt microtubule dynamics, interfere with DNA replication, and induce mitochondrial-mediated apoptosis. They also modulate key oncogenic signalling pathways such as nuclear factor kappa B (NF-κB), signal transducer and activator of transcription 3 (STAT3), and phosphatidylinositol-3-kinase/protein kinase B (PI3K/Akt), thereby enhancing the efficacy of existing chemotherapies. Endophyte derived compounds further inhibit angiogenesis, suppress metastasis, and stimulate immune responses, offering multi-target mechanisms with reduced toxicity. This review examines strategies that enhance the discovery and yield of these bioactive metabolites, including One Strain Many Compounds (OSMAC), microbial co-culture, epigenetic activation, genome mining, and synthetic biology. A comparative assessment of endophyte-derived versus conventional anticancer agents highlights their potential for scalable, eco-sustainable production. Collectively, endophytic fungi are positioned as promising contributors to the next generation of accessible, cost-effective, and environmentally responsible anticancer therapies.

## Linked entities

- **Proteins:** NFKB1 (nuclear factor kappa B subunit 1), STAT3 (signal transducer and activator of transcription 3)
- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** CYCS (cytochrome c, somatic) [NCBI Gene 54205] {aka CYC, HCS, THC4}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, CASP9 (caspase 9) [NCBI Gene 842] {aka APAF-3, APAF3, ICE-LAP6, MCH6, PPP1R56}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, DCTN6 (dynactin subunit 6) [NCBI Gene 10671] {aka WS-3, WS3, p27}, DNTT (DNA nucleotidylexotransferase) [NCBI Gene 1791] {aka TDT}, CCNL2 (cyclin L2) [NCBI Gene 81669] {aka ANIA-6B, CCNM, CCNS, HCLA-ISO, HLA-ISO, PCEE}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, ABCB1 (ATP binding cassette subfamily B member 1) [NCBI Gene 5243] {aka ABC20, CD243, CLCS, ENPAT, GP170, MDR1}, BCL2L1 (BCL2 like 1) [NCBI Gene 598] {aka BCL-XL/S, BCL2L, BCLX, Bcl-X, PPP1R52}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, TOP2A (DNA topoisomerase II alpha) [NCBI Gene 7153] {aka TOP2, TOP2alpha, TOPIIA, TP2A}, PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 5295] {aka AGM7, GRB1, IMD36, p85, p85-ALPHA, p85alpha}, MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, CASP8 (caspase 8) [NCBI Gene 841] {aka ALPS2B, CAP4, Casp-8, FLICE, MACH, MCH5}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}
- **Diseases:** testicular cancer (MESH:D013736), gastric cancer (MESH:D013274), hematological malignancies (MESH:D019337), Mitochondrial Dysfunction (MESH:D028361), MDR (MESH:D018088), glioma (MESH:D005910), prostate and hepatic cancer (MESH:D011471), inflammation (MESH:D007249), disease (MESH:D004194), injury to (MESH:D014947), chronic myeloid leukemia (MESH:D015464), Tumor (MESH:D009369), neurotoxicity (MESH:D020258), lung cancer (MESH:D008175), irritation (MESH:D001523), liver, lung, ovarian, and colorectal cancer (MESH:D010051), hepatic or renal toxicity (MESH:D056486), triple-negative breast cancer (MESH:D064726), breast and lung cancer (MESH:D001943), lymphoma (MESH:D008223), solid (MESH:D018250), glioblastoma (MESH:D005909), Cassia fistula (MESH:D005402), necrosis (MESH:D009336), ovarian, lung, prostate, and Kaposi's sarcoma (MESH:D010049), hepatocellular carcinoma (MESH:D006528), colorectal (MESH:D015179), leukemia (MESH:D007938), deaths (MESH:D003643), breast (MESH:D061325), metastasis (MESH:D009362), T-cell lymphoma (MESH:D016399), Cytotoxicity (MESH:D064420), fatalities (MESH:C565541), lymphoblastic leukemia (MESH:D054198)
- **Chemicals:** Terpenoids (MESH:D013729), peptides (MESH:D010455), indirubin (MESH:C027185), 5-fluorouracil (MESH:D005472), xanthones (MESH:D044004), Diosgenin (MESH:D004144), hydroxyl (MESH:D017665), volatile organic compounds (MESH:D055549), ethanol (MESH:D000431), polyketide (MESH:D061065), indole alkaloids (MESH:D026121), alkaloids (MESH:D000470), topotecan (MESH:D019772), resveratrol (MESH:D000077185), Xanthone (MESH:C009689), PEG-400 (MESH:C000595213), benzophenones (MESH:D001577), teniposide (MESH:D013713), baccatin III (MESH:C073950), O (MESH:D010100), Beauvericin (MESH:C004456), gold (MESH:D006046), quinones (MESH:D011809), C (MESH:D002244), TSN (MESH:C036454), N (MESH:D009584), Podophyllotoxin (MESH:D011034), irinotecan (MESH:D000077146), polyethylene glycol (MESH:D011092), vincristine (MESH:D014750), Paclitaxel (MESH:D017239), Vinblastine (MESH:D014747), taxanes (MESH:D043823), lipid (MESH:D008055), ROS (MESH:D017382), heavy metal (MESH:D019216), indole (MESH:C030374), DMSO (MESH:D004121), anthraquinone (MESH:D000880), 5-azacytidine (MESH:D001374), Camptothecin (MESH:D002166), ITSN (MESH:C000720863), SAHA (MESH:D000077337), zerumbone (MESH:C403304), doxorubicin (MESH:D004317), naphthoquinones (MESH:D009285), anticancer (-), vinca alkaloid (MESH:D014748), methyl jasmonate (MESH:C072239), Hypericin (MESH:C004965), triterpenoid (MESH:D014315), etoposide (MESH:D005047), dUTP (MESH:C027078), lignans (MESH:D017705)
- **Species:** Sinopodophyllum hexandrum (Himalayan mayapple, species) [taxon 93608], Penicillium chrysogenum (species) [taxon 5076], Fungi (kingdom) [taxon 4751], Podophyllum peltatum (species) [taxon 35933], Curvularia geniculata (species) [taxon 418126], Eremophila maculata (spotted emu bush, species) [taxon 1214565], Cladosporium sp. (species) [taxon 1707700], Ceriporiopsis andreanae (species) [taxon 1117664], Fusarium solani (species) [taxon 169388], Aspergillus niger (species) [taxon 5061], Mus musculus (house mouse, species) [taxon 10090], Catharanthus roseus (chatas, species) [taxon 4058], Hypericum perforatum (species) [taxon 65561], Fusarium oxysporum (species) [taxon 5507], Nothapodytes nimmoniana (species) [taxon 159386], Alternaria alternata (species) [taxon 5599], Eremophila longifolia (species) [taxon 2528947], Danio rerio (leopard danio, species) [taxon 7955], Aspergillus flavus (species) [taxon 5059], Penicillium oxalicum (species) [taxon 69781], Quambalaria cyanescens (species) [taxon 345902], Laguncularia racemosa (species) [taxon 190524], Dysosma delavayi (species) [taxon 336383], Chaetomella raphigera (species) [taxon 241714], Pseudodidymocyrtis lobariellae (species) [taxon 2713990], Homo sapiens (human, species) [taxon 9606], Lasiodiplodia theobromae (species) [taxon 45133], Comoclathris sp. (species) [taxon 1979423], Camptotheca acuminata (species) [taxon 16922]
- **Cell lines:** HCT116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), U6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985), OSMAC — Ostrinia nubilalis (European corn borer), Spontaneously immortalized cell line (CVCL_Z424), MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), HepG-2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), CHO-K1 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0214), BT549 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_1092), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), 4T1 — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_0125), HCC1954 — Homo sapiens (Human), Breast ductal carcinoma, Cancer cell line (CVCL_1259), U87 — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_0022)

## Full text

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## Figures

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## References

164 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943294/full.md

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Source: https://tomesphere.com/paper/PMC12943294