# Multi-Kingdom Fecal Microbiota Alterations in Horses with Severe Equine Asthma

**Authors:** Rafaela Santos, Laszlo Hunyadi, Emily Sundman, Luis Morales Luna, Sarah Cate Hyde, Makala Cain, Kagan Migl, Jacob Ancira, Craig Tipton, Fernanda Rosa

PMC · DOI: 10.3390/microorganisms14020484 · Microorganisms · 2026-02-17

## TL;DR

This study finds that horses with severe asthma have altered gut microbes, which may worsen inflammation through the gut-lung connection.

## Contribution

The study identifies specific bacterial, archaeal, and fungal changes in the gut of horses with severe asthma.

## Key findings

- SEA-affected horses had lower archaeal diversity and higher Candidatus Nitrosocosmicus abundance.
- Blautia and Alternaria were less abundant in SEA-affected horses, potentially impacting metabolic and immune health.
- The gut microbiota imbalance in SEA may contribute to systemic inflammation via the gut–lung axis.

## Abstract

Severe equine asthma (SEA) is a chronic inflammation of airways affecting ~14–20% of adult horses in the Northern Hemisphere. SEA is characterized by a mixed phenotype of T helper cell responses with marked neutrophilia in the bronchoalveolar lavage fluid (BALF) of affected horses. Human studies have demonstrated the impact of gut microbiota in many diseases, including asthma susceptibility and severity. However, the potential role of the gut–lung axis in the development and persistence of SEA remains to be determined. This study aimed to identify key bacterial, archaeal, and fungal microbiota alterations in the feces of horses with severe neutrophilic asthma (n = 4) compared to healthy horses (n = 8). Archaea alpha diversity was lower in the feces of SEA-affected horses, but with high abundance of archaea genus Candidatus Nitrosocosmicus, which impacts hydrogen metabolism in horses with SEA. Other key bacterial and fungi species differences lower in SEA included Blautia and Alternaria, respectively. Blautia is associated with positive metabolic health due to its fibrolytic capabilities. Overall, our findings indicate that horses experiencing severe neutrophilic asthma have an imbalance in the intestinal microbiota that may exacerbate systemic inflammatory responses through the gut–lung axis.

## Linked entities

- **Diseases:** asthma (MONDO:0004979)

## Full-text entities

- **Genes:** AhR [NCBI Gene 100066186], IFN-g [NCBI Gene 100034181], G-CSF [NCBI Gene 100033922], IL-17F. [NCBI Gene 100069094], IL-1b [NCBI Gene 100034237], CXCL1 [NCBI Gene 100034121], IL-22 [NCBI Gene 100058976], IL-17 [NCBI Gene 100034142], TNF-a [NCBI Gene 100033834], CXCL8 [NCBI Gene 100037400]
- **Diseases:** Inflammation (MESH:D007249), shock (MESH:D012769), injury to (MESH:D014947), respiratory disease (MESH:D012140), asthmatic (MESH:D013224), digestive failure (MESH:D051437), Dysbiosis (MESH:D064806), Equine Asthma (MESH:D001249), airway disease (MESH:D029424), Chronic pulmonary inflammation (MESH:D011014), diarrhea (MESH:D003967), airway obstruction (MESH:D000402), colic (MESH:D003085), bronchospasm (MESH:D001986), respiratory distress (MESH:D012128), Anaphylactic (MESH:D000707), neutrophilic (MESH:C564275), neutrophilia (MESH:C563010), gastrointestinal diseases (MESH:D005767), coughing (MESH:D003371), tachypnea (MESH:D059246), wheezes (MESH:D012135), allergic (MESH:D004342), systemic (MESH:D015619), equine (MESH:D006734), fungal (MESH:D009181), immune dysregulation (OMIM:614878), intestinal diseases (MESH:D007410), SEA (MESH:D045169)
- **Chemicals:** formate (MESH:C030544), polysaccharides (MESH:D011134), lactic acid (MESH:D019344), detomidine (MESH:C041255), nitrogen (MESH:D009584), methane (MESH:D008697), butorphanol (MESH:D002077), HCO2 (-), bile acids (MESH:D001647), butyrate (MESH:D002087), propionate (MESH:D011422), steroid (MESH:D013256), lipopolysaccharides (MESH:D008070), acetate (MESH:D000085), H2 (MESH:D006859), Tryptophan (MESH:D014364), SCFA (MESH:D005232)
- **Species:** Blautia sp. (species) [taxon 1955243], Methanocorpusculum bavaricum (species) [taxon 71518], Debaryomyces hansenii (species) [taxon 4959], Faecalibacterium (genus) [taxon 216851], Aureobasidium leucospermi (species) [taxon 1093200], Spirochaeta sp. (species) [taxon 28185], Papiliotrema (genus) [taxon 189450], Pasteurella caballi (species) [taxon 243701], Lentihominibacter hominis (species) [taxon 2763645], Caecomyces (genus) [taxon 4823], Mus musculus (house mouse, species) [taxon 10090], Pyricularia oryzae (rice blast fungus, species) [taxon 318829], Prevotella heparinolytica (species) [taxon 28113], Christensenella sp. (species) [taxon 1935934], Equus asinus (African ass, species) [taxon 9793], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Nitrososphaera sp. (species) [taxon 1971748], Alternaria sect. Alternaria (section) [taxon 2499237], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Ascochyta medicaginicola (species) [taxon 107450], Cyphellophora livistonae (species) [taxon 1280622], Methanimicrococcus sp. (species) [taxon 2022468], Cladosporium cladosporioides (species) [taxon 29917], Aspergillus ruber (species) [taxon 396024], Ruminococcus (genus) [taxon 1263], Chlamydia trachomatis (species) [taxon 813], Fungi (kingdom) [taxon 4751], Clostridia (class) [taxon 186801], Cladosporium herbarum (species) [taxon 29918], Rhodotorula glutinis (species) [taxon 5535], Periconia sp. (species) [taxon 1756127], Capsulimonas corticalis (species) [taxon 2219043], Xeromyces bisporus (species) [taxon 89491], Wallemia sebi (species) [taxon 148960], Homo sapiens (human, species) [taxon 9606], Mycoplasma sp. (species) [taxon 2108], Fibrobacter sp. (species) [taxon 35828], Cladosporium sphaerospermum (species) [taxon 92950], Alternaria sp. (species) [taxon 1715220], Aspergillus amstelodami (species) [taxon 5054], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Candidatus Nitrosocosmicus (genus) [taxon 1826864], Methanobrevibacter sp. (species) [taxon 66852], Rhodotorula mucilaginosa (species) [taxon 5537], Equus caballus (domestic horse, species) [taxon 9796], Aspergillus versicolor (species) [taxon 46472], Akkermansia (genus) [taxon 239934], Methanocorpusculum labreanum (species) [taxon 83984], Ammonia (genus) [taxon 29189], Bacilli (class) [taxon 91061], Blautia (genus) [taxon 572511], Myrothecium (genus) [taxon 5531], Bacteroidia (class) [taxon 200643], Acrostalagmus luteoalbus (species) [taxon 132138]

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943238/full.md

## References

100 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943238/full.md

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Source: https://tomesphere.com/paper/PMC12943238