# Structure-Based Virtual Screening of Plant-Derived Flavonoids as Putative GLUT9 Binders with Antioxidant Properties

**Authors:** Kevser Kübra Kırboğa, Emre Aktaş, Ecir Uğur Küçüksille, Mithun Rudrapal

PMC · DOI: 10.3390/molecules31040593 · Molecules · 2026-02-09

## TL;DR

This study identifies plant-based flavonoids that may bind to GLUT9 and have antioxidant properties, potentially offering new treatments for hyperuricemia.

## Contribution

The study introduces a computational and experimental approach to identify flavonoids as potential GLUT9 binders with antioxidant activity.

## Key findings

- Eight flavonoids showed favorable binding affinities to GLUT9, with EGCG having the highest at −9.10 kcal/mol.
- EGCG demonstrated superior antioxidant activity compared to ascorbic acid with a DPPH IC50 of 3.28 μM.
- MD simulations confirmed structural stability of the flavonoid-GLUT9 complexes over 100 ns.

## Abstract

Hyperuricemia affects approximately 20% of the global adult population and serves as the primary etiological factor for gout. Glucose transporter 9 (GLUT9) plays a critical role in renal urate reabsorption, representing a promising therapeutic target for hyperuricemia treatment. This study employed an integrated computational and experimental approach to identify novel flavonoid-based putative GLUT9 binders, combining molecular docking, molecular dynamics (MD) simulations, ADMET prediction, antioxidant evaluation, and density functional theory (DFT) calculations. Eight structurally diverse flavonoids were docked against the human GLUT9 cryo-EM structure, and antioxidant activities were assessed using DPPH, ABTS, and FRAP assays. All tested flavonoids exhibited favorable binding affinities ranging from −7.67 to −9.10 kcal/mol. Epigallocatechin gallate (EGCG) demonstrated the highest binding affinity (−9.10 kcal/mol) with an extensive hydrogen bonding network, while chrysin exhibited the second-highest affinity (−8.35 kcal/mol) with favorable drug-like properties. MD simulations over 100 ns confirmed the structural stability of the complexes. EGCG displayed exceptional antioxidant capacity (DPPH IC50 = 3.28 μM) superior to ascorbic acid, whereas chrysin showed lower radical scavenging activity despite favorable GLUT9 binding. DFT calculations revealed that higher HOMO energies correlated with enhanced antioxidant activity. These findings suggest that EGCG and chrysin exhibit favorable GLUT9 binding profiles, warranting further functional and pharmacokinetic optimization.

## Linked entities

- **Proteins:** SLC2A6 (solute carrier family 2 member 6)
- **Chemicals:** Epigallocatechin gallate (PubChem CID 1287), EGCG (PubChem CID 65064), chrysin (PubChem CID 5281607), ABTS (PubChem CID 35688), ascorbic acid (PubChem CID 9888239)
- **Diseases:** hyperuricemia (MONDO:0002144), gout (MONDO:0005393)

## Full-text entities

- **Genes:** OAT (ornithine aminotransferase) [NCBI Gene 4942] {aka GACR, HOGA, OATASE, OKT}, SLC22A12 (solute carrier family 22 member 12) [NCBI Gene 116085] {aka OAT4L, RST, UAT, URAT1, hURAT1}, SLC22A1 (solute carrier family 22 member 1) [NCBI Gene 6580] {aka HOCT1, OCT1, oct1_cds}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, SLC2A9 (solute carrier family 2 member 9) [NCBI Gene 56606] {aka GLUT9, GLUTX, UAQTL2, URATv1}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, SLC22A6 (solute carrier family 22 member 6) [NCBI Gene 9356] {aka HOAT1, OAT1, PAHT, ROAT1}, SLC2A1 (solute carrier family 2 member 1) [NCBI Gene 6513] {aka CSE, DYT17, DYT18, DYT9, EIG12, GLUT}, UOX (urate oxidase (pseudogene)) [NCBI Gene 391051] {aka UOXP, URICASE}, CYP2C9 (cytochrome P450 family 2 subfamily C member 9) [NCBI Gene 1559] {aka CPC9, CYP2C, CYP2C10, CYPIIC9, P450-2C9, P450IIC9}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, ADA (adenosine deaminase) [NCBI Gene 100] {aka ADA1}, SLC2A2 (solute carrier family 2 member 2) [NCBI Gene 6514] {aka GLUT2}
- **Diseases:** gout (MESH:D006073), mitochondrial dysfunction (MESH:D028361), inflammation (MESH:D007249), hyperuricemic (MESH:C537696), injury to (MESH:D014947), metabolic syndrome (MESH:D024821), chronic kidney disease (MESH:D051436), hereditary renal hypouricemia (MESH:C564169), metabolic disorder (MESH:D008659), inflammatory arthritis (MESH:D001168), renal adverse events (MESH:D064420), fulminant (MESH:D017114), cardiovascular diseases (MESH:D002318), hepatitis (MESH:D056486), liver failure (MESH:D017093), type 2 diabetes mellitus (MESH:D003924), Hyperuricemia (MESH:D033461)
- **Chemicals:** flavone (MESH:C043562), Lesinurad (MESH:C000593471), allopurinol (MESH:D000493), Chrysin (MESH:C043561), theaflavins (MESH:C056068), EGCG (MESH:C045651), flavanone (MESH:C028610), NaCl (MESH:D012965), Trolox (MESH:C010643), methanol (MESH:D000432), DPPH (MESH:C004931), carbon (MESH:D002244), Quercetin (MESH:D011794), N (MESH:D009584), Uric acid (MESH:D014527), Myricetin (MESH:C040015), catechol (MESH:C034221), Apigenin (MESH:D047310), catechins (MESH:D002392), phospholipid (MESH:D010743), water (MESH:D014867), Kaempferol (MESH:C006552), flavonol (MESH:C041477), ethanol (MESH:D000431), allantoin (MESH:D000481), HCl (MESH:D006851), Ascorbic acid (MESH:D001205), probenecid (MESH:D011339), Na+ (MESH:D012964), Ferric Reducing Antioxidant (-), pyrogallol (MESH:D011748), Cl- (MESH:D002713), MDA (MESH:D008315), potassium persulfate (MESH:C009007), phenoxyl radical (MESH:C042329), lipid (MESH:D008055), ABTS (MESH:C002502), Naringenin (MESH:C005273), 2,4,6-tripyridyl-s-triazine (MESH:C002849), Flavonoids (MESH:D005419), glucose (MESH:D005947), reactive oxygen species (MESH:D017382), Benzbromarone (MESH:D001553), Luteolin (MESH:D047311), flavones (MESH:D047309), acetate (MESH:D000085), Hydrogen (MESH:D006859)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116]

## Full text

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## Figures

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## References

71 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943218/full.md

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Source: https://tomesphere.com/paper/PMC12943218