# Exploratory Analysis of Gut Microbiome and Metabolic Profile Changes Following Lenvatinib and Anti-PD-1 Combination Therapy in Liver Cancer

**Authors:** Rui Zhong, Zhikun Lin, Binghui Jin, Xiaolin Wang, Hua Mu, Jinlong Hu, Qi Li, Peng Dou, Xinyu Liu, Chunxiu Hu, Guowang Xu, Guang Tan

PMC · DOI: 10.3390/metabo16020097 · Metabolites · 2026-01-28

## TL;DR

This study explores how gut bacteria and metabolism change in mice with liver cancer before and after treatment with lenvatinib and anti-PD-1 therapy.

## Contribution

The study identifies specific gut microbiota and metabolite changes associated with lenvatinib and anti-PD-1 combination therapy in liver cancer.

## Key findings

- Combination therapy reduced certain gut bacteria like Lactobacillus and Clostridium while increasing Prevotella_7.
- Metabolite levels such as pyridoxic acid and deoxycholic acid increased, while myristic acid and uric acid decreased.
- The treatment partially reversed gut microbiome and metabolic changes caused by liver cancer in mice.

## Abstract

Background/Objectives: Lenvatinib combined with anti-PD-1 therapy has shown promise in the treatment of hepatocellular carcinoma (HCC). The study evaluates changes in gut microbiota (GM) and metabolites during HCC treatment with lenvatinib combined with anti-PD-1. Methods: An HCC mouse model was established via diethylnitrosamine (DEN) injection, and the mice were then treated with lenvatinib, anti-PD-1, or their combination. GM composition and structural changes were assessed by 16S rDNA sequencing, and metabolite abundance by liquid chromatography–mass spectrometry (LC–MS). Results: Significant alterations in GM and metabolites were observed in the HCC group compared to the control group, and compared with the HCC group, both monotherapy and combination therapy resulted in varying degrees of GM and metabolites rebalancing. Specifically, compared to the HCC group, lenvatinib combined with anti-PD-1 therapy decreased the abundance of GM, including p_Patescibacteria, g_Lactobacillus, g_Clostridium_sensu_stricto_1, g_Eubacterium_siraeum_group, and g_Desulfovibrio, while the abundance of g_Prevotella_7 increased. Metabolite changes included increased 4-pyridoxic acid, deoxycholic acid, and taurochenodesoxycholic acid, and decreased myristic acid, oleic acid, riboflavin, and uric acid. Conclusions: HCC induces substantial alterations in the GM and metabolic profile of mice. Lenvatinib combined with anti-PD-1 treatment partially modulates these dysregulations. The relevant GM and metabolites may be associated with the efficacy of combined therapy and could serve as potential markers for further investigation.

## Linked entities

- **Chemicals:** lenvatinib (PubChem CID 9823820), diethylnitrosamine (PubChem CID 5921), 4-pyridoxic acid (PubChem CID 6723), deoxycholic acid (PubChem CID 222528), taurochenodesoxycholic acid (PubChem CID 387316), myristic acid (PubChem CID 11005), oleic acid (PubChem CID 445639), riboflavin (PubChem CID 1072), uric acid (PubChem CID 1175)
- **Diseases:** hepatocellular carcinoma (MONDO:0007256), liver cancer (MONDO:0002691)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Ms6hm (minisatellite 6 hypermutable) [NCBI Gene 17653] {aka PC-1}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, Vip (vasoactive intestinal polypeptide) [NCBI Gene 22353], CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}
- **Diseases:** rectal cancer (MESH:D012004), cancer (MESH:D009369), injury to (MESH:D014947), liver-related diseases (MESH:D008107), inflammatory (MESH:D007249), metabolic disorders (MESH:D008659), tumorigenesis (MESH:D063646), metastasis (MESH:D009362), HCC (MESH:D006528), liver injury (MESH:D017093)
- **Chemicals:** acetonitrile (MESH:C032159), alanine (MESH:D000409), Uric acid (MESH:D014527), FA (MESH:C030544), 3-methyl-2-oxobutyrate (MESH:C001505), 4-pyridoxic acid (MESH:D011735), nylon (MESH:D009757), methanol (MESH:D000432), Deoxycholic acid (MESH:D003840), glutamate (MESH:D018698), water (MESH:D014867), ammonium bicarbonate (MESH:C027043), riboflavin (MESH:D012256), CoA (MESH:D003065), pelargonic acid (MESH:C008776), fatty acid (MESH:D005227), CTAB (MESH:D000077286), 2-oxoglutaric acid (MESH:D007656), CMC-Na (-), bile acid (MESH:D001647), 2-O-methylascorbic acid (MESH:C035661), SCFAs (MESH:D005232), DEN (MESH:D004052), Oleic acid (MESH:D019301), myristic acid (MESH:D019814), zirconia (MESH:C028541), lipid (MESH:D008055), purine (MESH:C030985), 1,5-anhydrosorbitol (MESH:C006584), LEN (MESH:C531958), agarose (MESH:D012685), tetracosahexaenoic acid (MESH:C099831), carboxymethylcellulose sodium (MESH:D002266)
- **Species:** Candidatus Saccharimonas (genus) [taxon 1331051], Lactobacillus (genus) [taxon 1578], Mus musculus (house mouse, species) [taxon 10090], Proteus (genus) [taxon 210425], Actinomycetota (actinobacteria, phylum) [taxon 201174], Desulfovibrio (genus) [taxon 872], Homo sapiens (human, species) [taxon 9606], Enterorhabdus (genus) [taxon 580024], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Bacteroidota (Bacteroides-Cytophaga-Flexibacter group, phylum) [taxon 976], [Eubacterium] siraeum (species) [taxon 39492], Bacillota (clostridial firmicutes, phylum) [taxon 1239]

## Full text

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## Figures

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## References

57 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943127/full.md

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Source: https://tomesphere.com/paper/PMC12943127