# Discovery of Novel c-di-GMP-Related Genes in Leptospira interrogans

**Authors:** Anielle Salviano de Almeida Ferrari, Davi Gabriel Salustiano Merighi, Aline Biazola Visnardi, Gabriela Roberto Silva, Cauê Augusto Boneto Gonçalves, Daniel Enrique Sanchez-Limache, Bruna Sayuri Cardoso Ogusku, Anacleto Silva de Souza, Robson Francisco de Souza, Cristiane Rodrigues Guzzo

PMC · DOI: 10.3390/pathogens15020151 · Pathogens · 2026-01-30

## TL;DR

This study identifies new genes related to c-di-GMP signaling in Leptospira interrogans, a bacterium that causes leptospirosis, offering insights into its survival and virulence.

## Contribution

The paper reports the discovery of novel c-di-GMP-related genes in Leptospira interrogans through bioinformatics and structural analysis.

## Key findings

- Seventeen proteins with GGDEF domains and others with EAL, HD-GYP, PilZ, and MshEN domains were identified in Leptospira interrogans.
- The findings suggest a complex c-di-GMP signaling network in Leptospira interrogans, potentially involved in biofilm formation and host interactions.
- The study provides a foundation for future functional studies on c-di-GMP's role in Leptospira physiology and virulence.

## Abstract

Cyclic di-GMP (bis-(3′→5′) cyclic dimeric guanosine monophosphate) is a ubiquitous bacterial second messenger that regulates a wide range of cellular processes, including biofilm formation, motility, virulence, and environmental adaptation. Its intracellular levels are dynamically controlled by diguanylate cyclases (DGCs), which synthesize c-di-GMP from GTP, and phosphodiesterases (PDEs), which degrade it into linear pGpG or GMP. The functional effects of cytoplasmic c-di-GMP are mediated through diverse effector proteins, including PilZ domain-containing receptors, transcription factors, and riboswitches. In Leptospira interrogans, a major pathogenic species responsible for leptospirosis, the regulatory roles of c-di-GMP remain poorly understood. Here, we performed a comprehensive bioinformatics and structural analysis of all predicted c-di-GMP related proteins in L. interrogans serovar Copenhageni strain Fiocruz L1-130, a serovar generally associated with severe manifestations of leptospirosis in humans. Our analysis identified seventeen proteins containing GGDEF domain, five proteins containing both GGDEF and EAL domains, four proteins containing EAL domain, five proteins containing HD-GYP domain, twelve proteins containing PilZ domain, and one protein containing an MshEN domain. Comparative analysis with well-characterized bacterial homologs suggests that L. interrogans possess a complex c-di-GMP signaling network, likely involved in modulating biofilm formation, host–pathogen interactions, and environmental survival. These findings provide new insights into the c-di-GMP regulatory network and on signal transduction in Leptospira and lay the foundation for future functional studies aimed at understanding its roles in physiology, virulence, and persistence.

## Linked entities

- **Proteins:** dgcS (diguanylate cyclase DgcS)
- **Chemicals:** cyclic di-GMP (PubChem CID 135440063), GTP (PubChem CID 135398633), pGpG (PubChem CID 53477532), GMP (PubChem CID 135398630)
- **Diseases:** leptospirosis (MONDO:0005825)
- **Species:** Leptospira interrogans (taxon 173), Leptospira interrogans serovar Copenhageni (taxon 44275)

## Full-text entities

- **Diseases:** typhoid fever (MESH:D014435), Chagas disease (MESH:D014355), malaria (MESH:D008288), toxoplasmosis (MESH:D014123), zoonotic disease (MESH:D015047), myalgia (MESH:D063806), fatalities (MESH:C565541), COVID-19 (MESH:D000086382), infection (MESH:D007239), tropical diseases (MESH:D015493), arthralgia (MESH:D018771), photophobia (MESH:D020795), deaths (MESH:D003643), fever (MESH:D005334), Weil's syndrome (MESH:D014895), ARDS (MESH:D012128), hypotension (MESH:D007022), vomiting (MESH:D014839), flooding (MESH:C565009), pulmonary hemorrhage (MESH:D006470), nausea (MESH:D009325), dengue (MESH:D003715), multi-organ failure (MESH:D009102), rash (MESH:D005076), diarrhea (MESH:D003967), acute kidney injury (MESH:D058186), conjunctival redness (MESH:D003229), jaundice (MESH:D007565), rickettsiosis (MESH:D012282), Leptospirosis (MESH:D007922), meningitis (MESH:D008580), headache (MESH:D006261), hepatic dysfunction (MESH:D008107), injury to (MESH:D014947), influenza (MESH:D007251), calf pain (MESH:D010146)
- **Chemicals:** guanosine (MESH:D006151), pyrophosphates (MESH:D011756), magnesium (MESH:D008274), manganese (MESH:D008345), ATP (MESH:D000255), pyrophosphate (MESH:C107241), GMP (MESH:C066524), amino acids (MESH:D000596), Cyclic di-GMP (MESH:C062025), Mg2+ (-), glutamate (MESH:D018698), copper (MESH:D003300), cyclic nucleotides (MESH:D009712), iron (MESH:D007501), alanine (MESH:D000409), guanine (MESH:D006147), c-di-AMP (MESH:C528998), mannose (MESH:D008358), GMP (MESH:D006157), GTP (MESH:D006160), metal (MESH:D008670), alginate (MESH:D000464), zinc (MESH:D015032), phosphate (MESH:D010710)
- **Species:** Legionella pneumophila (species) [taxon 446], Labyrinthula sp. f (species) [taxon 160257], Bacillus subtilis subsp. subtilis (subspecies) [taxon 135461], Lobocriconema sp. 1130 (species) [taxon 1807237], Persephonella marina (species) [taxon 309805], Bacillus anthracis (anthrax bacterium, species) [taxon 1392], Thalassomonas viridans (species) [taxon 137584], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Staphylococcus aureus (species) [taxon 1280], Vibrio cholerae (species) [taxon 666], Leptospira biflexa (species) [taxon 172], Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 (strain) [taxon 355277], Homo sapiens (human, species) [taxon 9606], Leptospira borgpetersenii serovar Hardjo-bovis (no rank) [taxon 338217], Clostridioides difficile (species) [taxon 1496], Leptospira interrogans serovar Copenhageni (no rank) [taxon 44275], Caulobacter vibrioides (species) [taxon 155892], Mesocricetus auratus (golden hamster, species) [taxon 10036], Leptospira interrogans serovar Lai (no rank) [taxon 57678], Xanthomonas citri (species) [taxon 346], Vibrio variabilis (species) [taxon 990271], Bdellovibrio bacteriovorus (species) [taxon 959], Sinorhizobium fredii (species) [taxon 380], Leptospira interrogans (species) [taxon 173], Streptococcus suis (species) [taxon 1307], Yersinia pestis (species) [taxon 632], Paraburkholderia caballeronis (species) [taxon 416943], Campylobacter jejuni (species) [taxon 197], Pseudomonas aeruginosa (species) [taxon 287], Mus musculus (house mouse, species) [taxon 10090], Xanthomonas campestris (species) [taxon 339], Cricetus cricetus (black-bellied hamster, species) [taxon 10034], Klebsiella pneumoniae (species) [taxon 573], Petrachloros mirabilis (species) [taxon 2918835], Clostridioides (genus) [taxon 1870884], Vibrio mediterranei (species) [taxon 689], Bacillus subtilis (species) [taxon 1423], Escherichia coli (E. coli, species) [taxon 562], Bacillus cereus (species) [taxon 1396]
- **Mutations:** D12A, H250, D108A, R88A, R147A, H221A, K225, H189, tyrosine 160 for isoleucine and arginine, D192A, H250A, D305A, Y285, Asp/Glu, H276, I294A, H189A, K317A, R146A, H276A, K225A, D305, H277, L294, E191A, E76A, R89A, E75A, D183A, D222, I294, Pro-Pro, R314A, G284A, H277A, D222A, H221, D108, D308A, H175A, E185, Y285A, P286A, E185A, D111A
- **Cell lines:** LIC_11189 — Homo sapiens (Human), Transformed cell line (CVCL_GF17), LIC_20180 — Homo sapiens (Human), Parkinson disease, Transformed cell line (CVCL_CS25), J774A.1 — Mus musculus (Mouse), Mouse reticulum cell sarcoma, Cancer cell line (CVCL_0358), LIC_10122 — Homo sapiens (Human), Transformed cell line (CVCL_AJ18), LIC_10138 — Homo sapiens (Human), Retinitis pigmentosa, Transformed cell line (CVCL_AM23), LIC_10139 — Homo sapiens (Human), Retinitis pigmentosa, Transformed cell line (CVCL_AM24), L1-130 — Homo sapiens (Human), Finite cell line (CVCL_1E38)

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## References

160 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943098/full.md

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Source: https://tomesphere.com/paper/PMC12943098