# Associations Between Gut Microbiome Enterotypes and Body Weight Change During Whole Milk Consumption

**Authors:** Panpan Qin, Lelde Berzina, Nina Rica Wium Geiker, Karoline Sandby, Thure Krarup, Karsten Kristiansen, Faidon Magkos

PMC · DOI: 10.3390/nu18040563 · Nutrients · 2026-02-09

## TL;DR

The study found that gut microbiome types (enterotypes) influence how body weight changes when people consume whole milk.

## Contribution

It shows that Bacteroides1 enterotype individuals lose weight with whole milk, while Ruminococcaceae enterotype individuals do not.

## Key findings

- B1 enterotype individuals lost body weight after whole milk consumption.
- Enterotype predicted body weight change (p = 0.0034).
- Urinary taurine changes correlated with weight loss in B1 individuals.

## Abstract

Background: Evidence is accumulating that gut bacterial communities modulate the outcome of dietary interventions. Objective: To assess how gut microbial enterotypes correlate with obesity-related outcomes during one month of whole milk consumption. Methods: This post hoc analysis used data from a previously published trial, which included a lead-in phase during which men with abdominal adiposity replaced habitual dairy product consumption with 400 g/day of whole milk for one month. We compared body weight, urinary metabolites, fecal metabolites, and gut microbiome composition and function based on shotgun metagenomic sequencing at the beginning and at the end of the lead-in phase between individuals with the two most prevalent enterotypes, the Bacteroides1 (B1) enterotype (n = 24) and the Ruminococcaceae (R) enterotype (n = 38). Results: Individuals with the B1 enterotype, but not those with the R enterotype, exhibited decreases in body weight and the relative abundance of Streptococcus thermophilus. Multiple linear regression analysis identified enterotype as a strong predictor of body weight change (p = 0.0034). In addition, urinary taurine level change was positively associated with body weight change in B1 individuals, not in R individuals. Conclusions: Our findings reveal an enterotype-specific response to an identical dietary modification, underscoring the value of integrating enterotype information into nutrition-intervention design and personalized nutrition strategies.

## Linked entities

- **Species:** Streptococcus thermophilus (taxon 1308)

## Full-text entities

- **Genes:** FASN (fatty acid synthase) [NCBI Gene 2194] {aka FAS, OA-519, SDR27X1}, GADL1 (GAD like acidic amino acid decarboxylase 1) [NCBI Gene 339896] {aka ADC, CSADC, HuADC, HuCSADC}, ABO (ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase) [NCBI Gene 28] {aka A3GALNT, A3GALT1, GTA, GTB, NAGAT}, CSAD (cysteine sulfinic acid decarboxylase) [NCBI Gene 51380] {aka CSADC, CSD, PCAP}, BAAT (bile acid-CoA:amino acid N-acyltransferase) [NCBI Gene 570] {aka BACAT, BACD1, BAT, FHCA3, HCHO}, GCG (glucagon) [NCBI Gene 2641] {aka GLP-1, GLP1, GLP2, GRPP}, GLP1R (glucagon like peptide 1 receptor) [NCBI Gene 2740] {aka GLP-1, GLP-1-R, GLP-1R}
- **Diseases:** hepatic steatosis (MESH:D005234), obesity (MESH:D009765), abdominal adiposity (MESH:D000007), Overweight (MESH:D050177), reduction in body weight (MESH:D001835), fat loss (MESH:D004620), metabolic disorders (MESH:D008659), injury to (MESH:D014947), inflammatory (MESH:D007249), hypertension (MESH:D006973), weight (MESH:D015431), insulin resistance (MESH:D007333)
- **Chemicals:** Taurine (MESH:D013654), lipid (MESH:D008055), Lead (MESH:D007854), tryptophan (MESH:D014364), 1H (-), sulfur (MESH:D013455), hypotaurine (MESH:C003949), bile acid (MESH:D001647), lactose (MESH:D007785), amino acid (MESH:D000596), nitrogen (MESH:D009584), dimethylamine (MESH:C034516), alanine (MESH:D000409), carbohydrate (MESH:D002241)
- **Species:** Bacillota (clostridial firmicutes, phylum) [taxon 1239], Streptococcus thermophilus (species) [taxon 1308], Lactococcus lactis (species) [taxon 1358], Ruminococcus (genus) [taxon 1263], gut metagenome (species) [taxon 749906], Lactobacillus acidophilus (species) [taxon 1579], Prevotella (genus) [taxon 838], Bacteroides (genus) [taxon 816], Mus musculus (house mouse, species) [taxon 10090], Bifidobacterium (genus) [taxon 1678], Homo sapiens (human, species) [taxon 9606], Phocaeicola (genus) [taxon 909656]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943088/full.md

## References

65 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943088/full.md

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Source: https://tomesphere.com/paper/PMC12943088