# Gut Microbiota-Derived Metabolites to Regulate Intramuscular Fat Deposition in Pigs

**Authors:** Han Yuan, Lanlan Yi, Huijin Jia, Guangyao Song, Wenjie Cheng, Yuxiao Xie, Junhong Zhu, Sumei Zhao

PMC · DOI: 10.3390/microorganisms14020320 · Microorganisms · 2026-01-29

## TL;DR

This paper reviews how gut microbes and their metabolites influence fat deposition in pig muscles, affecting pork quality.

## Contribution

It identifies microbial metabolites like SCFAs and bile acids as key regulators of intramuscular fat through specific signaling pathways.

## Key findings

- Gut microbiota composition correlates with intramuscular fat levels in pigs.
- Metabolites like SCFAs and bile acids modulate lipid metabolism via receptors such as GPR43 and FXR.
- Omics and fecal microbiota transplantation studies confirm causal links between gut microbes and IMF.

## Abstract

Intramuscular fat (IMF) is a crucial determinant of pork quality, influencing tenderness, flavor, and consumer preferences, yet selective breeding has reduced its levels in modern pigs. This review explores the molecular and cellular mechanisms of IMF deposition, including progenitor cell differentiation via pathways like Wnt/β-catenin and PPARγ, and advances in non-invasive detection methods such as hyperspectral imaging and Raman spectroscopy. It highlights correlations and causal links between the gut microbiota composition and IMF, established through omics analyses, fecal microbiota transplantation, and germ-free models. Key microbial metabolites, including short-chain fatty acids (SCFAs) and bile acids, modulate lipid metabolism bidirectionally via signaling receptors like GPR43, FXR, and TGR5. Future research should integrate multi-omics and develop probiotics to enhance IMF efficiency for sustainable pork production.

## Linked entities

- **Proteins:** PPARG (peroxisome proliferator activated receptor gamma), FFAR2 (free fatty acid receptor 2), NR1H4 (nuclear receptor subfamily 1 group H member 4), GPBAR1 (G protein-coupled bile acid receptor 1)

## Full-text entities

- **Genes:** FABP4 (fatty acid binding protein 4) [NCBI Gene 399533] {aka A-FABP, AFABP, ALBP, AP2, FABP3}, SREBF1 (sterol regulatory element binding transcription factor 1) [NCBI Gene 397308] {aka ADD1, SCREBP1, SREBF1c, SREBP-1, SREBP-1C, SREBP1}, FADS1 (fatty acid desaturase 1) [NCBI Gene 444995] {aka D5FAD, FADS1a, FADS1b}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 397671] {aka NR1C3}, RUNX2 (RUNX family transcription factor 2) [NCBI Gene 100737965], LPL (lipoprotein lipase) [NCBI Gene 397537], PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1) [NCBI Gene 100145903] {aka AMPK, AMPK1}, PPARBETA (peroxisome proliferator activated receptor beta) [NCBI Gene 100170123], MUC2 (mucin 2, oligomeric mucus/gel-forming) [NCBI Gene 100127145], CTNNB1 (catenin beta 1) [NCBI Gene 397657], FFAR2 (free fatty acid receptor 2) [NCBI Gene 100126285] {aka GPR43}, MLXIPL (MLX interacting protein like) [NCBI Gene 100170769] {aka ChREBP}, LEF1 (lymphoid enhancer binding factor 1) [NCBI Gene 100170126], CEBPA (CCAAT enhancer binding protein alpha) [NCBI Gene 397307] {aka C/EBP alpha}, Runx2 [NCBI Gene 100155806], DGAT1 (diacylglycerol O-acyltransferase 1) [NCBI Gene 397118] {aka DGAT}, Nr1h4 (nuclear receptor subfamily 1, group H, member 4) [NCBI Gene 20186] {aka Fxr, HRR1, RIP14, Rxrip14}, WNT10B (Wnt family member 10B) [NCBI Gene 100126276], SPP1 (secreted phosphoprotein 1) [NCBI Gene 397087] {aka Opn}, DGAT2 (diacylglycerol O-acyltransferase 2) [NCBI Gene 100294675], SMAD3 (SMAD family member 3) [NCBI Gene 397260] {aka MADH3}, SPDEF (SAM pointed domain containing ETS transcription factor) [NCBI Gene 100153013], peroxisome proliferator-activated receptor-gamma coactivator-1alpha [NCBI Gene 497232], ANGPTL4 (angiopoietin like 4) [NCBI Gene 397628] {aka PGAR}, FASN (fatty acid synthase) [NCBI Gene 397561], INS (insulin) [NCBI Gene 397415]
- **Diseases:** IMF (MESH:D006391), type 2 diabetes (MESH:D003924), Swine Fever (MESH:D006691), colitis (MESH:D003092), insulin resistance (MESH:D007333), Fat (MESH:D004620), metabolic disease (MESH:D008659), obese (MESH:D009765), hepatic steatosis (MESH:D005234), weight gain (MESH:D015430), drip loss (MESH:C000726767), diabetic (MESH:D003920), tumor (MESH:D009369), injury to (MESH:D014947)
- **Chemicals:** Acetate (MESH:D000085), SCFA (MESH:D005232), Folic acid (MESH:D005492), glucose (MESH:D005947), ursodeoxycholic acid (MESH:D014580), taurine (MESH:D013654), ATP (MESH:D000255), lipid (MESH:D008055), Butyrate (MESH:D002087), SFA (MESH:D005227), CDCA (MESH:D002635), Propionate (MESH:D011422), LCA (MESH:D008095), BAs (MESH:D001647), IMF (-), glycine (MESH:D005998), cholesterol (MESH:D002784), acetyl-CoA (MESH:D000105), stearic acid (MESH:C031183), Nucleotide (MESH:D009711), methane (MESH:D008697), polysaccharide (MESH:D011134), CA (MESH:D019826), tricarboxylic acid (MESH:D014233), triglyceride (MESH:D014280), DCA (MESH:D003840), fat (MESH:D005223), oxygen (MESH:D010100)
- **Species:** Gallus gallus (bantam, species) [taxon 9031], Spirochaeta (genus) [taxon 146], Mycoplasmatota (phylum) [taxon 544448], gut metagenome (species) [taxon 749906], Parabacteroides (genus) [taxon 375288], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Dehalobacterium (genus) [taxon 51514], Lactobacillus johnsonii (species) [taxon 33959], Rattus norvegicus (brown rat, species) [taxon 10116], Alistipes (genus) [taxon 239759], Sphaerochaeta globosa (species) [taxon 1131703], Homo sapiens (human, species) [taxon 9606], Sus scrofa (pig, species) [taxon 9823], Bacteroides uniformis (species) [taxon 820], Clostridium butyricum (species) [taxon 1492], Ruminococcus (genus) [taxon 1263], Methanobrevibacter (genus) [taxon 2172], Hydrogenoanaerobacterium saccharovorans (species) [taxon 474960], Mus musculus (house mouse, species) [taxon 10090], Prevotella (genus) [taxon 838], Pyramidobacter piscolens (species) [taxon 638849], Lacticaseibacillus rhamnosus GG (strain) [taxon 568703], Faecalibacterium (genus) [taxon 216851], Vibrio (genus) [taxon 662]
- **Cell lines:** MSC — Mus musculus (Mouse), Transformed cell line (CVCL_U446)

## Full text

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## References

96 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943087/full.md

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Source: https://tomesphere.com/paper/PMC12943087