# A Whole-Cell Catalytic System for Equol Production Based on Daidzein Reductase Engineering

**Authors:** Bing-Juan Li, Jiao-Jiao Zhuo, Meng-Ran Tian, Dan Meng, Hong-Yan Li

PMC · DOI: 10.3390/molecules31040711 · Molecules · 2026-02-18

## TL;DR

This study improves the production of (S)-equol by engineering an enzyme called daidzein reductase, achieving higher yields in a sustainable biocatalytic system.

## Contribution

A novel double mutant of daidzein reductase is developed, significantly enhancing catalytic efficiency for (S)-equol production.

## Key findings

- The DZNR30S+105S mutant achieved 238.3 mg/L (S)-equol at 1 mM daidzein.
- At 2 mM daidzein, the mutant produced 384.6 mg/L (S)-equol within 5 hours.
- The mutant shows excellent potential for high-substrate-concentration industrial applications.

## Abstract

As an isoflavone metabolite with diverse physiological activities, the development of efficient and sustainable manufacturing technologies for (S)-equol holds significant importance. This study focuses on the semi-rational design of daidzein reductase (DZNR), the first key enzyme in the (S)-equol biotransformation pathway. Through multiple sequence alignment and three-dimensional structural analysis, two critical residues, Gly30 and Ala105, were identified in DZNR. A library of single and combinatorial mutants was constructed and screened, yielding the double variant DZNR30S+105S with substantially enhanced catalytic performance. In a whole-cell biocatalytic system, the recombinant E. coli (Escherichia coli) strain harboring this combinatorial mutant achieved a yield of 238.3 mg/L (S)-equol at a substrate concentration of 1 mM daidzein, demonstrating markedly improved catalytic efficiency. Upon increasing the daidzein concentration to 2 mM, the reaction reached equilibrium within 5 h, producing 384.6 mg/L (S)-equol, which highlights the mutant’s excellent potential for high-substrate-concentration applications. This study not only provides novel mechanistic insights into DZNR catalysis but also successfully establishes a DZNR variant with enhanced activity, offering an efficient biocatalytic component for the industrial-scale biomanufacturing of (S)-equol and thereby advancing the development of green biosynthesis technologies for this valuable compound.

## Linked entities

- **Chemicals:** (S)-equol (PubChem CID 91469), daidzein (PubChem CID 5281708)
- **Species:** Escherichia coli (taxon 562)

## Full-text entities

- **Diseases:** inflammatory (MESH:D007249), injury to (MESH:D014947), obesity (MESH:D009765), OYE (MESH:C537729)
- **Chemicals:** M7 (MESH:C009957), oxygen (MESH:D010100), ketones (MESH:D007659), Coomassie Brilliant Blue (MESH:C004692), acetonitrile (MESH:C032159), C (MESH:D002244), (S)-Equol (MESH:D060754), lactic acid (MESH:D019344), 5-hydroxyequol (MESH:C000631586), water (MESH:D014867), glycine (MESH:D005998), SDS (MESH:D012967), nitriles (MESH:D009570), sodium phosphate (MESH:C018279), (S)-DHD (MESH:C433163), Ac-DZNR (-), daidzein (MESH:C004742), isoflavone (MESH:D007529), ampicillin (MESH:D000667), glucose (MESH:D005947), NADH (MESH:D009243)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Clostridium sp. (species) [taxon 1506], Adlercreutzia equolifaciens subsp. celatus (subspecies) [taxon 394340], Escherichia coli BL21(DE3) (strain) [taxon 469008], Homo sapiens (human, species) [taxon 9606], Slackia isoflavoniconvertens (species) [taxon 572010], Escherichia coli DH5[alpha] (strain) [taxon 668369], Gallus gallus (bantam, species) [taxon 9031]
- **Mutations:** 30  C, Ser105, A105C, G30S, A105S, Ser30, Ala105, A/T, Gly30, 30Ala, P212A, P464A, Cys105, T169A, S118G
- **Cell lines:** -1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943075/full.md

## References

29 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943075/full.md

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Source: https://tomesphere.com/paper/PMC12943075