# Changes in the Rhizospheric Microbiota of Pepitilla Maize in Response to Drought: Functional and Taxonomic Analysis

**Authors:** Ricardo Zacamo-Velázquez, Lorena Jacqueline Gómez-Godínez, Humberto Ramírez-Vega, Víctor Manuel Gómez-Rodríguez, Carlos Iván Cruz-Cárdenas, José Martin Ruvalcaba-Gómez, Juan José Valdez-Alarcón, Ramón Ignacio Arteaga-Garibay

PMC · DOI: 10.3390/microorganisms14020291 · Microorganisms · 2026-01-27

## TL;DR

This study explores how drought affects the rhizospheric bacteria of a native maize variety, Pepitilla, and identifies specific bacterial groups that respond to water stress.

## Contribution

The study provides new insights into the taxonomic and functional changes in the rhizospheric microbiota of Pepitilla maize under drought conditions.

## Key findings

- Drought significantly altered the abundance of bacterial taxa like Actinobacteria and Proteobacteria in the rhizosphere.
- Certain bacterial families, such as Microbacteriaceae and Sphingomonadaceae, showed increased relative abundance under drought stress.
- The study highlights the potential role of specific bacterial groups in plant responses to drought stress.

## Abstract

Native maize varieties provide important information for counteracting the effects of climate change, which leads to agricultural drought. The native rhizospheric microbiota is an ecological niche that maintains a close relationship with the plant and helps mitigate the effects of drought on it. The objective of this study was to describe the composition and structure of the rhizospheric bacterial communities of the native Pepitilla maize plants under conditions of water stress. An experiment was conducted under greenhouse conditions with three irrigation regimes and a control with normal irrigation. The responses of the plants to drought and the rhizospheric bacterial microbiota were measured before, during, and after the drought. Bacterial diversity was analyzed from rhizospheric soil using massive sequencing of the 16S rRNA gene. The drought model applied in the experiment had a negative effect on the plants, affecting their physiological, morphological, and biochemical functions. Diversity analyses showed statistical differences between the conditions during and after the drought in most cases. A reduction and modification in bacterial abundance was observed during the drought condition across different taxonomic groups, the most representative being the phyla Actinobacteriota, Pseudomonadota, and Acidobacteriota; the families Acidobacteriaceae, Rhodanobacteraceae, Solirubrobacteraceae, Acidothermaceae, and Microbacteriaceae; and the genera Actinobacteria, Sphingomonas, Geodermatophilus, Conexibacter, and Acidothermus. It is worth noting that the taxa Actinobacteria and Proteobacteria, as well as the families Microbacteriaceae, Sphingomonadaceae, and Unclassified_Actinobacteria, were directly associated with the drought condition, as an increase in their relative abundance was observed. This information is very useful for understanding the relationship between certain taxa enriched during stress conditions and the physiology of maize plants.

## Linked entities

- **Species:** Zea mays (taxon 4577), Pseudomonadota (taxon 1224), Acidobacteriota (taxon 57723), Acidobacteriaceae (taxon 204434), Rhodanobacteraceae (taxon 1775411), Solirubrobacteraceae (taxon 320599), Acidothermaceae (taxon 85032), Microbacteriaceae (taxon 85023), Sphingomonas (taxon 13687), Geodermatophilus (taxon 1860), Conexibacter (taxon 191494), Acidothermus (taxon 28048)

## Full-text entities

- **Genes:** amidase [NCBI Gene 100283862]
- **Diseases:** Drought (MESH:C536747), injury to (MESH:D014947), Water (MESH:D000069578)
- **Chemicals:** chloroform (MESH:D002725), agarose (MESH:D012685), Ammonium Sulfate (MESH:D000645), potassium (MESH:D011188), silicon (MESH:D012825), (NH4)2HPO4 18-46 (-), toluene (MESH:D014050), CTAB (MESH:D000077286), phenol (MESH:D019800), water (MESH:D014867), ethanol (MESH:D000431), Ammonium Nitrate (MESH:C006568), DAP (MESH:C024788), SDS (MESH:D012967), isopropanol (MESH:D019840), isoamyl alcohol (MESH:C029683), Sugar (MESH:D000073893), salts (MESH:D012492), phosphorus (MESH:D010758), TE (MESH:D013691), ABA (MESH:D000040), L-proline (MESH:D011392), NaCl (MESH:D012965), chlorophyll (MESH:D002734), C (MESH:D002244), ethylene (MESH:C036216), EDTA (MESH:D004492), N (MESH:D009584)
- **Species:** Acidothermus (genus) [taxon 28048], Geodermatophilus (genus) [taxon 1860], Streptacidiphilus (genus) [taxon 228398], Bacillus (genus) [taxon 55087], Microbacterium (genus) [taxon 33882], Granulicella (genus) [taxon 940557], Crossiella (genus) [taxon 130795], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Solanum lycopersicum (tomato, species) [taxon 4081], Acidobacteriota (phylum) [taxon 57723], Burkholderia (genus) [taxon 32008], Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Sphingomonas (genus) [taxon 13687], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Paraburkholderia (genus) [taxon 1822464], Jatrophihabitans (genus) [taxon 1434010], Actinomycetota (actinobacteria, phylum) [taxon 201174], Caballeronia (genus) [taxon 1827195], Conexibacter (genus) [taxon 191494], Dyella (genus) [taxon 231454]
- **Cell lines:** PC3 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0035)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12943028/full.md

## References

71 references — full list in the complete paper: https://tomesphere.com/paper/PMC12943028/full.md

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Source: https://tomesphere.com/paper/PMC12943028