# A Potent Quinone Reductase Encoded by ywqN (Qnr1) Protects Bacillus subtilis from Oxygen Radical Genotoxicity

**Authors:** Beatriz R. González, Norma Ramírez, Karen Abundiz-Yáñez, Víctor M. Ayala-García, Luz I. Valenzuela-García, Eduardo A. Robleto, Mario Pedraza-Reyes

PMC · DOI: 10.3390/molecules31040701 · Molecules · 2026-02-17

## TL;DR

A protein called YwqN in Bacillus subtilis helps protect the bacteria from harmful oxygen radicals and may be useful for cleaning up toxic dyes.

## Contribution

Discovery of YwqN as a potent quinone reductase with protective roles against ROS and azo dyes in B. subtilis.

## Key findings

- YwqN reduces menadione and naphthoquinone, showing potent quinone reductase activity.
- YwqN and YhdA together protect B. subtilis from hydrogen peroxide-induced damage.
- YwqN suppresses mutagenesis caused by oxidized guanine and superoxide-generating agents.

## Abstract

ywqN encodes a protein with an unassigned function that shares partial 3D homology with B. subtilis YhdA, Pseudomonas putida ChrR, and Escherichia coli YieF, which are NADP(H)/FMN-dependent oxidoreductases that catalyze the reduction of diverse chemical pollutants, including Cr(VI). Here, we report that a recombinant His6-YwqN protein displays marginal chromate reductase activity but is capable of reducing synthetic azo dyes. Remarkably, His6-YwqN exhibits a potent quinone reductase activity, catalyzing the reduction of menadione (MD) and 1,4-naphthoquinone (NQ). The individual and combined roles of YwqN and YhdA in protecting B. subtilis from ROS-promoting agents were further tested. Sensitization to the oxidizing agent H2O2 required the simultaneous loss of both YwqN and YhdA. In contrast, strains deficient in ywqN, either alone or in combination with yhdA, exhibited similar but higher susceptibilities to the superoxide-generating agent MD compared with the WT strain. These results indicate that YwqN and YhdA contribute to protection against the deleterious effects of ROS in B. subtilis. Further results revealed that while YwqN, but not YhdA, prevented MD-induced mutagenesis, both proteins synergistically prevented RifR mutations induced by H2O2. Furthermore, overexpression of YwqN suppressed the hypermutagenesis phenotype of a B. subtilis strain deficient in the prevention/repair oxidized guanine (GO) system, which is prone to accumulate 8-oxoGs. In summary, YwqN counteracts the cytotoxic and genotoxic effects promoted by ROS in B. subtilis and represents a potential tool for the remediation of soils and effluents contaminated with carcinogenic azo dyes.

## Linked entities

- **Genes:** ywqN (putative oxidoreductase) [NCBI Gene 936882], yhdA (regulatory protein CsrD) [NCBI Gene 1027034]
- **Proteins:** ywqN (putative oxidoreductase), yhdA (regulatory protein CsrD)
- **Chemicals:** NADP(H) (PubChem CID 5884), FMN (PubChem CID 643976), Cr(VI) (PubChem CID 29131), chromate (PubChem CID 24461), menadione (PubChem CID 4055), 1,4-naphthoquinone (PubChem CID 8530), H2O2 (PubChem CID 784), MD (PubChem CID 23943)
- **Species:** Bacillus subtilis (taxon 1423), Pseudomonas putida (taxon 303), Escherichia coli (taxon 562)

## Full-text entities

- **Diseases:** cytotoxic (MESH:D064420), carcinogenic (MESH:D011230), injury to (MESH:D014947)
- **Chemicals:** ROS (MESH:D017382), Cm (MESH:D002701), ubiquinol (MESH:C003741), benzoquinone (MESH:C004532), MO (MESH:C100258), hydrogen (MESH:D006859), Coomassie Blue (MESH:C048139), tryptophan (MESH:D014364), NAD+ (MESH:D009243), Lys (MESH:D008239), KCl (MESH:D011189), flavin (MESH:C024132), agarose (MESH:D012685), MR (MESH:C008492), Azo dyes (MESH:D001391), ubiquinone (MESH:D014451), His6 (MESH:C471213), IPTG (MESH:D007544), FMN (MESH:D005486), Amp (MESH:D000667), nitrofurans (MESH:D009581), Rif (MESH:D012293), FAD (MESH:D005182), Ni-NTA (MESH:C088321), chromium (MESH:D002857), NADP+ (MESH:D009249), PMSF (MESH:D010664), Tet (MESH:D013752), glycerol (MESH:D005990), superoxide (MESH:D013481), His6 -YwqN (-), H2O2 (MESH:D006861), naphthoquinone (MESH:D009285), hydroxyl (MESH:D017665), Ery (MESH:D004917), Kan (MESH:D007612), glutamate (MESH:D018698), SDS (MESH:D012967), DTT (MESH:D004229), MES (MESH:C004550), ribitol (MESH:D012255), 1,4-naphthoquinone (MESH:C035342), nicotinamide (MESH:D009536), water (MESH:D014867), imidazole (MESH:C029899), polyacrylamide (MESH:C016679), agar (MESH:D000362), isoalloxazine (MESH:C008173), Cr(VI) (MESH:C074702), Oxygen (MESH:D010100), phosphate (MESH:D010710), NaCl (MESH:D012965), MD (MESH:D024483), Sp (MESH:D000198), chromate (MESH:D002840), quinone compounds (MESH:D011809), metal (MESH:D008670)
- **Species:** Bacillus subtilis subsp. subtilis (subspecies) [taxon 135461], Bacillus subtilis subsp. subtilis str. 168 (strain) [taxon 224308], Homo sapiens (human, species) [taxon 9606], Staphylococcus aureus (species) [taxon 1280], Helicobacter pylori (species) [taxon 210], Pseudomonas putida (species) [taxon 303], Deinococcus radiodurans (species) [taxon 1299], Enterococcus faecalis (species) [taxon 1351], Archaeoglobus fulgidus (species) [taxon 2234], Pseudomonas aeruginosa (species) [taxon 287], Bacillus subtilis (species) [taxon 1423], Cereibacter sphaeroides (species) [taxon 1063], Escherichia coli (E. coli, species) [taxon 562]
- **Cell lines:** PERM1892 — Homo sapiens (Human), Finite cell line (CVCL_F015)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12942883/full.md

## References

48 references — full list in the complete paper: https://tomesphere.com/paper/PMC12942883/full.md

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Source: https://tomesphere.com/paper/PMC12942883