# Targeting the JNK Gatekeepers: Structural Evolution and Medicinal Chemistry of MKK4 and MKK7 Inhibitors

**Authors:** Min Zhao, Baojian Li, Ying Gao, Yan Liang, Nanqi Shao, Xinbo Shi, Jie Li

PMC · DOI: 10.3390/molecules31040672 · Molecules · 2026-02-15

## TL;DR

This paper reviews the development of inhibitors targeting MKK4 and MKK7, upstream regulators of the JNK pathway, for treating diseases like fibrosis and liver dysfunction.

## Contribution

The paper provides a critical review of structural and medicinal advances in MKK4 and MKK7 inhibitors, highlighting their distinct therapeutic potentials and design strategies.

## Key findings

- MKK4 inhibition is a promising strategy for liver regeneration, as demonstrated by HRX215.
- MKK7 inhibition is being explored for anti-fibrotic and anti-inflammatory applications.
- Structure-based design strategies, such as covalent targeting of MKK7's Cys218, improve inhibitor selectivity.

## Abstract

The c-Jun N-terminal kinase (JNK) pathway is a central driver of fibrosis, inflammation, and neurodegeneration. While direct JNK inhibitors have shown therapeutic promise, achieving high isoform selectivity remains a significant medicinal chemistry challenge. Furthermore, targeting the upstream ‘gatekeepers’ MKK4 and MKK7 offers a distinct mechanism to modulate pathway output with greater precision. Consequently, medicinal chemistry efforts have shifted upstream to the dual-specificity kinases MKK4 and MKK7. This review critically evaluates the structural biology and pharmacological evolution of small-molecule inhibitors targeting these nodes. We contrast the distinct therapeutic landscapes of the two kinases: while MKK4 inhibition has emerged as a breakthrough strategy for unlocking liver regeneration (exemplified by the first-in-class clinical candidate HRX215), MKK7 inhibition is primarily pursued for its anti-fibrotic and anti-inflammatory potential. Special attention is given to structure-based design strategies, including the exploitation of the unique hinge-region cysteine (Cys218) for MKK7-specific covalent targeting and the optimization of scaffold selectivity against off-targets like BRAF. Finally, we discuss emerging modalities, such as PROTACs and dual inhibitors, outlining a roadmap for the next generation of precision therapeutics targeting the MKK–JNK axis.

## Linked entities

- **Genes:** MAP2K4 (mitogen-activated protein kinase kinase 4) [NCBI Gene 6416], MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609], BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673]
- **Proteins:** MAPK8 (mitogen-activated protein kinase 8), MAP2K4 (mitogen-activated protein kinase kinase 4), MAP2K7 (mitogen-activated protein kinase kinase 7), BRAF (B-Raf proto-oncogene, serine/threonine kinase)

## Full-text entities

- **Genes:** MAP2K2 (mitogen-activated protein kinase kinase 2) [NCBI Gene 5605] {aka CFC4, MAPKK2, MEK2, MKK2, PRKMK2}, FLT3 (fms related receptor tyrosine kinase 3) [NCBI Gene 2322] {aka CD135, FLK-2, FLK2, STK1}, MAPK9 (mitogen-activated protein kinase 9) [NCBI Gene 5601] {aka JNK-55, JNK2, JNK2A, JNK2ALPHA, JNK2B, JNK2BETA}, Egfr (epidermal growth factor receptor) [NCBI Gene 13649] {aka 9030024J15Rik, Erbb, Errb1, Errp, Wa5, wa-2}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, MAPK7 (mitogen-activated protein kinase 7) [NCBI Gene 5598] {aka BMK1, ERK4, ERK5, PRKM7}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, Flt3 (FMS-like tyrosine kinase 3) [NCBI Gene 14255] {aka B230315G04, CD135, Flk-2, Flk2, Flt-3, Ly72}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, MAP3K7 (mitogen-activated protein kinase kinase kinase 7) [NCBI Gene 6885] {aka CSCF, FMD2, MEKK7, TAK1, TGF1a}, Lrrk2 (leucine-rich repeat kinase 2) [NCBI Gene 66725] {aka 4921513O20Rik, 9330188B09Rik, D630001M17Rik, Gm927, cI-46}, SAA1 (serum amyloid A1) [NCBI Gene 6288] {aka PIG4, SAA, TP53I4}, SLC1A3 (solute carrier family 1 member 3) [NCBI Gene 6507] {aka EA6, EAAT1, GLAST, GLAST1}, MAP3K1 (mitogen-activated protein kinase kinase kinase 1) [NCBI Gene 4214] {aka MAPKKK1, MEKK, MEKK 1, MEKK1, SRXY6}, MAP2K6 (mitogen-activated protein kinase kinase 6) [NCBI Gene 5608] {aka CRCMSL, MAPKK6, MEK6, MKK6, PRKMK6, SAPKK-3}, App (amyloid beta precursor protein) [NCBI Gene 11820] {aka Abeta, Abpp, Adap, Ag, Cvap, E030013M08Rik}, TIPRL (TOR signaling pathway regulator) [NCBI Gene 261726] {aka TIP, TIP41, TIPRL1}, Itk (IL2 inducible T cell kinase) [NCBI Gene 16428] {aka Emt, Tcsk, Tsk}, Map2k7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 26400] {aka 5930412N11Rik, JNKK 2, Jnkk2, MAPKK 7, MEK 7, Mapkk7}, MAP2K3 (mitogen-activated protein kinase kinase 3) [NCBI Gene 5606] {aka MAPKK3, MEK3, MKK3, PRKMK3, SAPKK-2, SAPKK2}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, Aurkb (aurora kinase B) [NCBI Gene 20877] {aka AIM-1, AIRK2, Aik2, Aim1, Ark2, AurB}, MAP2K4 (mitogen-activated protein kinase kinase 4) [NCBI Gene 6416] {aka JNKK, JNKK1, MAPKK4, MEK4, MKK4, PRKMK4}, KLF4 (KLF transcription factor 4) [NCBI Gene 9314] {aka EZF, GKLF}, Rps6kb1 (ribosomal protein S6 kinase B1) [NCBI Gene 72508] {aka 2610318I15Rik, P70S6K1, S6K, S6K-beta-1, S6K1, p70 S6K-alpha}, Braf (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 109880] {aka 9930012E13Rik, B-raf, Braf-2, Braf2, C230098H17, D6Ertd631e}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, Th (tyrosine hydroxylase) [NCBI Gene 21823], Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, MAPK8IP2 (mitogen-activated protein kinase 8 interacting protein 2) [NCBI Gene 23542] {aka IB-2, IB2, JIP2, PRKM8IPL}, STC2 (stanniocalcin 2) [NCBI Gene 8614] {aka STC-2, STCRP}, Mapk8 (mitogen-activated protein kinase 8) [NCBI Gene 26419] {aka JNK, JNK1, Prkm8, SAPK1}, MAPK10 (mitogen-activated protein kinase 10) [NCBI Gene 5602] {aka JNK3, JNK3A, PRKM10, SAPK1b, p493F12, p54bSAPK}, JUN (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3725] {aka AP-1, AP1, c-Jun, cJUN, p39}, MAP2K1 (mitogen-activated protein kinase kinase 1) [NCBI Gene 5604] {aka CFC3, MAPKK1, MEK1, MEL, MKK1, PRKMK1}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Mapk14 (mitogen-activated protein kinase 14) [NCBI Gene 26416] {aka CSBP2, Crk1, Csbp1, Mxi2, PRKM14, PRKM15}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, MAPK8IP3 (mitogen-activated protein kinase 8 interacting protein 3) [NCBI Gene 23162] {aka JIP-3, JIP3, JSAP1, NEDBA, SYD2, syd}, TNFSF10 (TNF superfamily member 10) [NCBI Gene 8743] {aka APO2L, Apo-2L, CD253, TANCR, TL2, TNLG6A}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, Cd86 (CD86 antigen) [NCBI Gene 12524] {aka B7, B7-2, B7.2, B70, CLS1, Cd28l2}, RORC (RAR related orphan receptor C) [NCBI Gene 6097] {aka IMD42, NR1F3, RORG, RZR-GAMMA, RZRG, TOR}, ATF2 (activating transcription factor 2) [NCBI Gene 1386] {aka CRE-BP1, CREB-2, CREB2, HB16, TREB7}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Rps6ka1 (ribosomal protein S6 kinase A1) [NCBI Gene 20111] {aka Mapkapk-1a, Rsk, Rsk-1, Rsk1, S6K-alpha-1, p90-Rsk1}, Bmx (BMX non-receptor tyrosine kinase) [NCBI Gene 12169] {aka Etk, Etk/Bmx, Tyro8}, Map2k4 (mitogen-activated protein kinase kinase 4) [NCBI Gene 26398] {aka JNKK1, MAPKK 4, MEK4, MKK4, PRKMK4, Sek1}, MAP2 (microtubule associated protein 2) [NCBI Gene 4133] {aka MAP-2, MAP2A, MAP2B, MAP2C}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, CDH5 (cadherin 5) [NCBI Gene 1003] {aka 7B4, CD144}, Gadd45b (growth arrest and DNA-damage-inducible 45 beta) [NCBI Gene 17873] {aka Myd118}, MAPK14 (mitogen-activated protein kinase 14) [NCBI Gene 1432] {aka CSBP, CSBP1, CSBP2, CSPB1, EXIP, Mxi2}, AURKB (aurora kinase B) [NCBI Gene 9212] {aka AIK2, AIM-1, AIM1, ARK-2, ARK2, AurB}, MIR493 (microRNA 493) [NCBI Gene 574450] {aka MIRN493, hsa-mir-493, mir-493}, Btk (Bruton agammaglobulinemia tyrosine kinase) [NCBI Gene 12229] {aka xid}, Jak3 (Janus kinase 3) [NCBI Gene 16453] {aka fae, wil}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, PLK4 (polo like kinase 4) [NCBI Gene 10733] {aka MCCRP2, SAK, STK18}
- **Diseases:** acute (MESH:D000208), NSCLC (MESH:D002289), mammary tumors (MESH:D015674), autoimmune conditions (MESH:D001327), ASH (MESH:D005235), tumorigenesis (MESH:D063646), AD (MESH:D000544), lung cancer (MESH:D008175), MM (MESH:D009101), adenocarcinoma (MESH:D000230), Cancer (MESH:D009369), liver fibrosis (MESH:D008103), neurodegeneration (MESH:D019636), injury to (MESH:D014947), CLDs (MESH:D008107), Inflammation (MESH:D007249), prostate cancer (MESH:D011471), fibrosis (MESH:D005355), glioma (MESH:D005910), PD (MESH:D010300), pancreatic cancer (MESH:D010190), HCC (MESH:D006528), aneuploidy (MESH:D000782), sepsis (MESH:D018805), chronic (MESH:D002908), liver tumors (MESH:D008113), invasive (MESH:D009361), increased intracranial pressure (MESH:D019586), breast cancer (MESH:D001943), liver injury (MESH:D017093), T-ALL (MESH:D054218), cytotoxic (MESH:D064420), ALF (MESH:D017114), serum transfer arthritis (MESH:D001168), RA (MESH:D001172), liver metastasis (MESH:D009362), tumorigenic (MESH:D002471), leukemic (MESH:D007938), colorectal cancer (MESH:D015179)
- **Chemicals:** oligonucleotides (MESH:D009841), copper (MESH:D003300), indazole (MESH:D007191), acetic acid (MESH:D019342), glutamate (MESH:D018698), acrylamide (MESH:D020106), pyrimidine (MESH:C030986), sorbitol (MESH:D013012), Leu (MESH:D007930), water (MESH:D014867), anisomycin (MESH:D000841), ibrutinib (MESH:C551803), pyrrolo[2,3-b]pyridine (MESH:C486292), propionic acid (MESH:C029658), bortezomib (MESH:D000069286), ammonium (MESH:D064751), bilirubin (MESH:D001663), BI-D1870 (MESH:C516541), isobutyric acid (MESH:C020380), resorcinol (MESH:C031389), AST-487 (MESH:C522130), sulfonamide (MESH:D013449), azides (MESH:D001386), carboxylic acid (MESH:D002264), CCl4 (MESH:D002251), carbon (MESH:D002244), Vemurafenib (MESH:D000077484), methionine (MESH:D008715), alpha-carboline (MESH:C055571), 1H-pyrazolo[3,4-b]pyridine (MESH:C478081), osimertinib (MESH:C000596361), Lysine (MESH:D008239), vitamin B6 (MESH:D025101), hydrogen (MESH:D006859), sphingosine (MESH:D013110), alkyne (MESH:D000480), pyrrolo[2,3-d]pyrimidine (MESH:C450639), triazole (MESH:D014230), ATP (MESH:D000255), phenylpiperazine (MESH:C031503), 5(Z)-7-oxozeaenol (MESH:C505734), steroids (MESH:D013256), MPTP (MESH:D015632), benzylamine (MESH:C030796), LPS (MESH:D008070), Cys (MESH:D003545), 7-azaindole (MESH:C023422), pyrrolopyrimidine (MESH:C527741), AMP-PNP (MESH:D000266), amino acid (MESH:D000596), chlorine (MESH:D002713), Ser (MESH:D012694), 23, 24, and 25 (-), D- (MESH:D003903), aminopyrimidine (MESH:C012180), naphthoquinone (MESH:D009285), sulfur (MESH:D013455), pyridine (MESH:C023666)
- **Species:** Sus scrofa (pig, species) [taxon 9823], Heterostelium pseudocandidum (species) [taxon 361137], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** C481S, T790M, BRAFV600E, L858R, S6, R134W, p.Glu116Lys, Cys218, C797S
- **Cell lines:** HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), MiaPaCa2 — Homo sapiens (Human), Pancreatic undifferentiated carcinoma, Cancer cell line (CVCL_0428), 3T3 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006), CD18 — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_0313), Caco-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025)

## Full text

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## References

95 references — full list in the complete paper: https://tomesphere.com/paper/PMC12942867/full.md

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Source: https://tomesphere.com/paper/PMC12942867