# Beyond the Single Isolate: Leveraging Plant-Associated Microbial Communities for Crop Resilience

**Authors:** Ashish Kumar Sarker, Karishma D. Kuar, Esha Kuriakose, C. Oliver Morton, Colin M. Stack, Michelle C. Moffitt

PMC · DOI: 10.3390/microorganisms14020456 · Microorganisms · 2026-02-13

## TL;DR

This review explores how using groups of beneficial microbes, called SynComs, can improve crop resilience and reduce reliance on chemicals in agriculture.

## Contribution

The paper bridges the gap between scientific research on microbial communities and practical farm implementation for sustainable agriculture.

## Key findings

- Single-strain microbial inoculants are less effective than synthetic microbial communities (SynComs).
- SynComs can act as a multifunctional solution for plant health and productivity.
- Field reliability of SynComs is inconsistent due to production and stability issues.

## Abstract

The future of sustainable agriculture will require practical microbial solutions that reduce chemical inputs while maintaining productivity. While existing literature reviews focus on laboratory science, they rarely address the practicalities of farm implementation. Low rates of adoption suggest a translational gap. This review translates current scientific insights for the relevant end user (farmers). Pesticides and fertilisers disrupt naturally occurring microbial communities that maintain plant health and resilience. Applications of beneficial microbes to restore plant health or improve productivity currently employ single-strain inoculants. The targeted application of a consortium of multiple microorganisms, a “synthetic community” (SynCom), including biocontrol agents, biostimulants and biofertilisers, is superior. The “SynCom” approach could be considered the Swiss army knife of sustainable agriculture, with each member of the community performing overlapping functions. While SymComs have shown success in laboratory and greenhouse trials, field reliability has been inconsistent, either due to variability in production or stability issues in the field. The future of sustainable agriculture will require greater collaboration between scientists and farmers at a local level, specifically, the application of microbes from local soils that are adapted to local environmental conditions, investment in monitoring successes and failures, and application via seed coating using currently available infrastructure.

## Full-text entities

- **Diseases:** injury to (MESH:D014947), wilt disease (MESH:D004194), green mould (OMIM:614156), microbial dysfunction (MESH:D015163), gut paralysis (MESH:D010243), nematode infection (MESH:D009349), toxicity (MESH:D064420), drought (MESH:C536747), death (MESH:D003643), fungal (MESH:D009181)
- **Chemicals:** ammonium (MESH:D064751), N2 (MESH:D009584), azole (MESH:D001393), streptomycin (MESH:D013307), carbon (MESH:D002244), Phosphate (MESH:D010710), P (MESH:D010758), NH3 (MESH:D000641), water (MESH:D014867), iron (MESH:D007501), methyl bromide (MESH:C005218), BCAs (-)
- **Species:** Bacillus amyloliquefaciens (species) [taxon 1390], Sinorhizobium (genus) [taxon 28105], Ensifer (genus) [taxon 106591], Pseudomonas chlororaphis (species) [taxon 587753], Fusarium solani (species) [taxon 169388], Glycine max (soybean, species) [taxon 3847], Bacillus subtilis (species) [taxon 1423], Agaricus bisporus (common mushroom, species) [taxon 5341], Bacillus sp. T (species) [taxon 1071724], Fungi (kingdom) [taxon 4751], Trichoderma harzianum (species) [taxon 5544], Bacillus subtilis GB03 [taxon 1423687], Trichoderma aggressivum (species) [taxon 173216], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Homo sapiens (human, species) [taxon 9606], Rhizobium (genus) [taxon 379], Trichoderma sp. (species) [taxon 1715253], Aspergillus (genus) [taxon 5052], Bacillus thuringiensis (species) [taxon 1428], Bradyrhizobium (genus) [taxon 374], Rhizoctonia solani (species) [taxon 456999], Azotobacter (genus) [taxon 352], Pochonia chlamydosporia (species) [taxon 280754]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12942860/full.md

## References

144 references — full list in the complete paper: https://tomesphere.com/paper/PMC12942860/full.md

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Source: https://tomesphere.com/paper/PMC12942860