# Polymicrobial Late-Onset Knee Prosthetic Joint Infection Involving Parvimonas micra: A Case Report and Genomic Characterization

**Authors:** Mauro Jose Salles, Daniel Litardi Pereira, Ícaro Santos Oliveira, Fabiano Nunes Farias, Rafaela Carvalho Luz, Paola Cappellano, André Mário Doi, Raquel Bandeira da Silva

PMC · DOI: 10.3390/microorganisms14020413 · Microorganisms · 2026-02-10

## TL;DR

A rare case of knee prosthetic joint infection involving Parvimonas micra and Staphylococcus aureus is reported, with genomic insights into the pathogen's virulence and treatment outcomes.

## Contribution

This case highlights the overlooked role of Parvimonas micra in chronic prosthetic joint infections and provides genomic characterization of its virulence traits.

## Key findings

- The P. micra strain showed 97.2% identity to a reference strain and carried virulence genes like groEL, tufA, clpP, and gaIE.
- Resistance genes vanW, vanT, and vanY were detected, but vanA and vanB were absent.
- The patient's symptoms resolved after two-stage revision surgery and targeted antimicrobial therapy.

## Abstract

We report a rare case of polymicrobial late-onset knee prosthetic joint infection (PJI) caused by Parvimonas micra and Staphylococcus aureus. An 80-year-old woman with multiple comorbidities presented, five years after total knee arthroplasty, with progressive pain and radiographic signs of prosthetic loosening. Synovial fluid analysis revealed marked neutrophilic inflammation, and intraoperative tissue cultures, including sonication fluid yielded both pathogens. Identification was confirmed by MALDI-TOF MS and whole-genome sequencing (WGS). The P. micra strain showed 97.2% identity to reference strain SAMN29629855, and carried virulence genes such as groEL, tufA, clpP, ctrD, srtC4, and gaIE, associated with oxidative stress response, adhesion, immune evasion, and biofilm formation. Resistance genes vanW, vanT, and vanY from the van operon were also detected, though vanA and vanB were absent. The patient underwent a two-stage revision surgery and a 12-week course of pathogen-targeted antimicrobial therapy, with complete resolution of symptoms and no recurrence after 12 months. This case highlights the overlooked pathogenicity of P. micra in chronic PJIs, especially in polymicrobial biofilm-related infections. The integration of WGS provided valuable insights into possible genetic characteristics of virulence determinants of this rare cause of PJI.

## Linked entities

- **Genes:** HSPD1 (heat shock protein family D (Hsp60) member 1) [NCBI Gene 3329], tufA (elongation factor Tu) [NCBI Gene 800172], CLPP (caseinolytic mitochondrial matrix peptidase proteolytic subunit) [NCBI Gene 8192], CTR-D (copper transporter) [NCBI Gene 6069756], vanW (glycopeptide resistance accessory protein VanW) [NCBI Gene 83003393], vanT (serine racemase VanT catalytic subunit) [NCBI Gene 42857389], vanY (VanY-A/VanY-F/VanY-M family D-Ala-D-Ala carboxypeptidase) [NCBI Gene 34217656], vanA (vanillate O-demethylase oxygenase) [NCBI Gene 877879], vanB (vanillate O-demethylase) [NCBI Gene 877880]
- **Species:** Parvimonas micra (taxon 33033), Staphylococcus aureus (taxon 1280)

## Full-text entities

- **Diseases:** pyomyositis (MESH:D052880), obesity (MESH:D009765), colorectal carcinogenesis (MESH:D063646), hip or (MESH:D025981), fever (MESH:D005334), injury to (MESH:D014947), periodontitis (MESH:D010518), panophthalmitis (MESH:D010202), inflammation (MESH:D007249), Pain (MESH:D010146), diabetes mellitus (MESH:D003920), aseptic failure (MESH:D051437), pulmonary empyema (MESH:D004653), anorexia (MESH:D000855), central nervous system abscesses (MESH:D002493), meningitis (MESH:D008580), spondylodiscitis (MESH:D015299), breast cancer (MESH:D001943), endocarditis (MESH:D004696), osteomyelitis (MESH:D010019), prosthetic dysfunction (MESH:D006331), perforated (MESH:D057112), periodontal disease (MESH:D010510), Infectious Diseases (MESH:D003141), native joint arthritis (MESH:D001168), neutrophilic (MESH:C564275), bacteremia (MESH:D016470), atrial fibrillation (MESH:D001281), chronic periodontitis (MESH:D055113), P. micra infection (MESH:D016720), PJI (MESH:D007239), ulcer (MESH:D014456), joint pain (MESH:D018771), Bone and Joint Infection (MESH:D001847), knee osteoarthritis (MESH:D020370), gingivitis (MESH:D005891)
- **Chemicals:** PMMA (MESH:D019904), clindamycin (MESH:D002981), penicillin G (MESH:D010400), vancomycin (MESH:D014640), gentamicin (MESH:D005839), methicillin (MESH:D008712), lipoteichoic acid (MESH:C009900), metronidazole (MESH:D008795), glycopeptide (MESH:D006020), beta-lactams (MESH:D047090), Pipe/tazo (-), penicillin (MESH:D010406), Piperacillin/tazobactam (MESH:D000077725), ceftriaxone (MESH:D002443)
- **Species:** Veillonella (genus) [taxon 29465], Enterobacterales (order) [taxon 91347], Parvimonas micra (species) [taxon 33033], Cutibacterium acnes (species) [taxon 1747], Actinomyces naeslundii (species) [taxon 1655], Fusobacterium nucleatum (species) [taxon 851], Finegoldia magna (species) [taxon 1260], Streptococcus (genus) [taxon 1301], Porphyromonas gingivalis (species) [taxon 837], Bacteroides (genus) [taxon 816], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Staphylococcus aureus (species) [taxon 1280], Homo sapiens (human, species) [taxon 9606], Clostridium (genus) [taxon 1485]

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12942851/full.md

## References

52 references — full list in the complete paper: https://tomesphere.com/paper/PMC12942851/full.md

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Source: https://tomesphere.com/paper/PMC12942851