# In Vitro Effects of Twelve Food Additives on Gut Microbiome and Its Fibre Fermentation Capacity in Adults with Crohn’s Disease in Remission and Healthy Controls

**Authors:** Hanoof Alessa, Molly Elizabeth Quinn, Linah Alhomidan, Cameron Ross, Stefanos Kainadas, Emily Brownson, Jonathan MacDonald, John Paul Seenan, Ben Nichols, Athanasios Koutsos, Konstantinos Gerasimidis

PMC · DOI: 10.3390/nu18040668 · Nutrients · 2026-02-18

## TL;DR

This study found that certain food additives can change gut bacteria and how fiber is broken down, with some effects seen in both people with Crohn's disease and healthy individuals.

## Contribution

The study is among the first to investigate the effects of food additives on gut microbiome and fiber fermentation in Crohn’s disease patients and healthy controls using in vitro methods.

## Key findings

- Maltodextrin increased acetate production in both healthy controls and Crohn’s disease patients.
- Polysorbate-80 and maltodextrin caused significant shifts in gut microbiome structure in both groups.
- Certain additives like sodium benzoate and polysorbate-80 reduced the abundance of specific gut bacteria in both groups.

## Abstract

Background/Objectives: Animal studies have shown that food additives may adversely affect the gut microbiome. However, the effect of food additives on the microbiome in adults with Crohn’s disease (CD) remains less explored. This study investigated the impact of food additives on gut microbiome and fibre fermentation capacity in adults with CD and healthy controls (HCs) using in vitro faecal fermentations. Methods: Faeces from 6 HCs and 6 patients with CD in clinical remission (Harvey Bradshaw Index < 5) were used for in vitro fermentation of a fibre mix with one of 12 food additives (calcium propionate, carboxymethylcellulose, carrageenan kappa, cinnamaldehyde, maltodextrin, polysorbate-80, potassium sorbate, sodium benzoate, sodium sulphite, titanium dioxide, turmeric, and xanthan gum). Short-chain fatty acids (SCFAs) were measured using gas chromatography, the microbiome was profiled with 16S rRNA amplicon sequencing and total bacterial load was measured with qPCR. Results: Maltodextrin increased acetate production in both groups. In HCs, turmeric increased acetate and butyrate production, sodium sulphite reduced acetate production, and maltodextrin reduced butyrate production. Microbiome Shannon α-diversity increased with titanium dioxide (both groups), and with carrageenan kappa only in patients with CD. In both groups, the addition of maltodextrin and polysorbate-80 induced significant shifts in microbiome structure (β-diversity). Significant shifts were seen with maltodextrin (HC: R2 = 6.8%, p = 0.001; CD: R2 = 5.1%, p = 0.004) and sodium sulphite (HC: R2 = 6.9%, p = 0.001). Maltodextrin significantly decreased the estimated absolute abundance of Escherichia–Shigella in patients CD; sodium benzoate, potassium sorbate, and calcium propionate did so in HCs. Faecalibacterium decreased in the presence of polysorbate-80 in the HC and CD groups, as well as in the presence of maltodextrin in the CD group. Total bacterial load decreased with polysorbate-80, potassium sorbate, maltodextrin and calcium propionate in both groups. Xanthan gum decreased total bacterial load in HCs. Conclusion: Certain food additives significantly affected fibre fermentation capacity and microbiome structure, with only modest differences observed according to participants’ health status.

## Linked entities

- **Chemicals:** calcium propionate (PubChem CID 19999), carboxymethylcellulose (PubChem CID 24748), cinnamaldehyde (PubChem CID 637511), potassium sorbate (PubChem CID 23673839), sodium benzoate (PubChem CID 517055), sodium sulphite (PubChem CID 24437), titanium dioxide (PubChem CID 26042)
- **Diseases:** Crohn’s disease (MONDO:0005011)

## Full-text entities

- **Genes:** IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, mucin [NCBI Gene 100508689], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, LCN2 (lipocalin 2) [NCBI Gene 3934] {aka 24p3, MSFI, NGAL, p25}, MPO (myeloperoxidase) [NCBI Gene 4353], IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, MUC2 (mucin 2, oligomeric mucus/gel-forming) [NCBI Gene 4583] {aka MLP, MUC-2, SMUC}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}
- **Diseases:** ulcerative colitis (MESH:D003093), IBD (MESH:D015212), colitis (MESH:D003092), dysbiosis (MESH:D064806), CD (MESH:D003424), HS (MESH:C567159), gut inflammation (MESH:D007249), injury to (MESH:D014947), colorectal cancer (MESH:D015179)
- **Chemicals:** alpha-cellulose (MESH:D002482), sulphite (MESH:D013447), HCl (MESH:D006851), enanthate (MESH:D006537), inulin (MESH:D007444), polysorbate-80 (MESH:D011136), acetate (MESH:D000085), valerate (MESH:D014631), NaOH (MESH:D012972), SCFA (MESH:D005232), diethyl ether (MESH:D004986), Xanthan gum (MESH:C002563), caprylate (MESH:D002210), Potassium sorbate (MESH:D013011), titanium dioxide (MESH:C009495), glutathione (MESH:D005978), luminal (MESH:D010634), TD (MESH:C076628), CMC (MESH:D002266), water (MESH:D014867), resazurin (MESH:C005843), SB (MESH:D000965), aspartame (MESH:D001218), iso-butyrate (MESH:D058610), sucrose (MESH:D013395), Calcium propionate (MESH:C514136), L-cysteine hydrochloride (MESH:D003545), Cinnamaldehyde (MESH:C012843), nitrogen (MESH:D009584), pectin (MESH:D010368), benzoic acid (MESH:D019817), sodium benzoate (MESH:D020160), polysaccharides (MESH:D011134), butyrate (MESH:D002087), sodium nitrite (MESH:D012977), boric acid (MESH:C032688), propionate (MESH:D011422), bile acids (MESH:D001647), hydrogen sulfide (MESH:D006862), acesulfame potassium (MESH:C006362), curcumin (MESH:D003474), caproate (MESH:C037652), sucralose (MESH:C026285), nylon (MESH:D009757), NaHCO3 (MESH:D017693), PTS (MESH:D010984), 2-Ethylbutyric acid (-), carrageenan (MESH:D002351), oxygen (MESH:D010100), Maltodextrin (MESH:C008315), oligofructose (MESH:C120489), Sodium sulphite (MESH:C025026)
- **Species:** Lactococcus lactis (species) [taxon 1358], Enterococcus (genus) [taxon 1350], Phocaeicola vulgatus (species) [taxon 821], Streptococcus thermophilus (species) [taxon 1308], Lactiplantibacillus plantarum (species) [taxon 1590], Blautia (genus) [taxon 572511], Bilophila wadsworthia (species) [taxon 35833], Lactobacillus acidophilus (species) [taxon 1579], gut metagenome (species) [taxon 749906], Ruminococcus (genus) [taxon 1263], Curcuma longa (turmeric, species) [taxon 136217], Akkermansia (genus) [taxon 239934], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Mus musculus (house mouse, species) [taxon 10090], Rattus norvegicus (brown rat, species) [taxon 10116], [Clostridium] leptum (species) [taxon 1535], Homo sapiens (human, species) [taxon 9606], Faecalibacterium prausnitzii (species) [taxon 853], Bifidobacterium (genus) [taxon 1678], Rodentia (rodent, order) [taxon 9989], Lacticaseibacillus rhamnosus (species) [taxon 47715], Faecalibacterium (genus) [taxon 216851], Bilophila (genus) [taxon 35832], Lacticaseibacillus casei (species) [taxon 1582], Danio rerio (leopard danio, species) [taxon 7955], Malus domestica (apple, species) [taxon 3750], Anaerobutyricum hallii (species) [taxon 39488], Escherichia coli (E. coli, species) [taxon 562], Lachnoclostridium (genus) [taxon 1506553]

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## Figures

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## References

55 references — full list in the complete paper: https://tomesphere.com/paper/PMC12942771/full.md

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Source: https://tomesphere.com/paper/PMC12942771