# A Genome-Wide Mutant Screen Identifies XopN and XopX as Core Type III Effectors Required for Peach Infection by Xanthomonas arboricola pv. pruni

**Authors:** Nanami Sakata, Yasuhiro Ishiga

PMC · DOI: 10.3390/microorganisms14020335 · Microorganisms · 2026-02-02

## TL;DR

This study identifies key genes in a bacterium that causes peach disease, revealing new targets for controlling the infection.

## Contribution

A genome-wide screen identifies XopN and XopX as essential type III effectors for peach infection by Xanthomonas arboricola pv. pruni.

## Key findings

- XopN and XopX are core type III effectors crucial for symptom induction in peach infection.
- Mutants in hrpF, pstS, and other metabolic genes show reduced virulence despite similar bacterial population levels.
- Bacterial multiplication and symptom development are not necessarily linked in this pathosystem.

## Abstract

Xanthomonas arboricola pv. pruni causes bacterial spot in peaches, a major disease affecting global Prunus production. Despite its economic significance, the virulence mechanisms that enable X. arboricola pv. pruni to colonize peach tissues and induce characteristic necrotic symptoms remain poorly understood. To identify key virulence determinants, a robust and reliable detached-leaf inoculation system was developed, and a genome-wide forward genetic screen of 2400 Tn5 mutants was conducted. A total of 34 mutants with consistently reduced virulence were identified, representing diverse functional categories including secretion systems, nutrient acquisition, primary metabolism, and regulatory pathways. The most prominent findings were the repeated identification of independent mutants in two type III effector genes, xopN and xopX, highlighting these effectors as central and nonredundant contributors to symptom induction. Mutants in the type III secretion system translocon-associated gene hrpF also showed virulence defects. Additional mutants affecting phosphate uptake (pstS), ammonium transport, and vitamin B6 biosynthesis (pdxA, serC) revealed metabolic requirements essential for in planta fitness. Notably, several mutants reached bacterial population levels comparable to the wild-type isolate but produced little or no symptoms, indicating that bacterial multiplication and symptom development are not necessarily linked. This study provides the first comprehensive genome-wide functional screen of X. arboricola pv. pruni virulence and establishes a framework for dissecting infection mechanisms. The essential factors identified here, particularly XopN, XopX, and key metabolic pathways, represent promising targets for future anti-virulence strategies to manage bacterial spot disease. Characterizing the specific functions of each virulence factor identified in this study will be an important focus of future work.

## Linked entities

- **Genes:** xopN (type III secretion system effector XopN) [NCBI Gene 46982436], xopX (XopX family type III secretion system effector) [NCBI Gene 46982724], KLK4 (kallikrein related peptidase 4) [NCBI Gene 9622], pdxA (4-hydroxythreonine-4-phosphate dehydrogenase) [NCBI Gene 880733], serC (3-phosphoserine/phosphohydroxythreonine aminotransferase) [NCBI Gene 882700]
- **Species:** Xanthomonas arboricola pv. pruni (taxon 69929), Prunus (taxon 3754)

## Full-text entities

- **Diseases:** bacterial blight (MESH:D001424), Necrosis (MESH:D009336), toxicity (MESH:D064420), Peach Infection (MESH:D007239), injury to (MESH:D014947)
- **Chemicals:** callose (MESH:C048306), glucose (MESH:D005947), threonine (MESH:D013912), Tween 20 (MESH:D011136), Vitamin B6 (MESH:D025101), H2O2 (MESH:D006861), DXP (-), serine (MESH:D012694), Carbohydrate (MESH:D002241), rifampicin (MESH:D012293), Amino Acids (MESH:D000596), thiamine (MESH:D013831), fluoride (MESH:D005459), water (MESH:D014867), kanamycin (MESH:D007612), S-adenosyl-L-homocysteine (MESH:D012435), ethanol (MESH:D000431), Cofactor (MESH:C013123), glycine (MESH:D005998), branched-chain amino acid (MESH:D000597), phosphate (MESH:D010710), sugar (MESH:D000073893), SA (MESH:D020156), methionine (MESH:D008715), NDP-sugar (MESH:D009702), agar (MESH:D000362), pentose phosphate (MESH:D010428), Carbon (MESH:D002244), ammonium (MESH:D064751), glycan (MESH:D011134)
- **Species:** Oryza sativa (Asian cultivated rice, species) [taxon 4530], Xanthomonas arboricola pv. pruni (no rank) [taxon 69929], Prunus (genus) [taxon 3754], Xanthomonas oryzae pv. oryzae (no rank) [taxon 64187], Pseudomonas putida (species) [taxon 303], Solanum lycopersicum (tomato, species) [taxon 4081], Homo sapiens (human, species) [taxon 9606], Staphylococcus aureus (species) [taxon 1280], Brassica oleracea (wild cabbage, species) [taxon 3712], Citrus (genus) [taxon 2706], Xanthomonas citri pv. glycines (no rank) [taxon 473421], Xanthomonas arboricola (species) [taxon 56448], Glycine max (soybean, species) [taxon 3847], Escherichia coli (E. coli, species) [taxon 562], Prunus persica (peach, species) [taxon 3760], Streptococcus mutans (species) [taxon 1309], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Pectobacterium (genus) [taxon 122277], Xanthomonas campestris (species) [taxon 339]
- **Cell lines:** PXA19-15- — Homo sapiens (Human), Pancreatic adenocarcinoma, Cancer cell line (CVCL_9502), XH56 — Mus musculus (Mouse), Factor-dependent cell line (CVCL_C4TM), E. coli S17-1 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_E226)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12942743/full.md

## References

49 references — full list in the complete paper: https://tomesphere.com/paper/PMC12942743/full.md

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Source: https://tomesphere.com/paper/PMC12942743