# Identifying Key Factors Affecting mRNA-Lipid Nanoparticles Drug Product Formulation Stability

**Authors:** Alireza Nomani, Aishwarya Saraswat, Heather Brown, Jimmy Chun-Tien Kuo, Huu Thuy Trang Duong, Jikang Wu, Yu Zhang, Yue Fu, Youmi Moon, Shafiq Wahidi, Nancy Mejia, Suzanne Hartford, Haibo Qiu, Bindhu Rayaprolu, Amardeep S. Bhalla, Mohammed Shameem

PMC · DOI: 10.3390/nano16040268 · Nanomaterials · 2026-02-18

## TL;DR

This study identifies key factors affecting the long-term stability of mRNA-lipid nanoparticle formulations, emphasizing the importance of cold storage and optimized components.

## Contribution

The study systematically evaluates LNP stability under various storage conditions and identifies specific degradation mechanisms.

## Key findings

- Storage at 5 °C and 25 °C caused significant degradation and loss of transfection efficiency in LNP formulations.
- Oxidative and hydrolytic lipid degradation were identified as primary failure modes in specific LNP formulations.
- Increasing Tris buffer concentration accelerated mRNA 5′-cap hydrolysis, highlighting the need for low-ionic-strength buffers.

## Abstract

Background: The long-term stability of mRNA-lipid nanoparticles (LNPs), essential for mRNA vaccines and gene therapies, relies on managing physicochemical properties to preserve their integrity and effectiveness through optimized formulation components. This study systematically evaluated LNP formulations with varied compositions, e.g., Dlin-MC3-DMA and ALC-0315 as ionizable lipids, and DMG-PEG2k or ALC-0159 as polyethylene glycol (PEG)-lipids, stored at −80 °C, −20 °C, 5 °C, and 25 °C in Tris buffer (pH 7.4) for 12 months. Methods: Sixteen quality attributes were analyzed, including particle size, mRNA encapsulation, lipid oxidation, and transfection efficiency over different formulations and storage temperatures to mechanistically evaluate the long-term stabilities. Results: Formulations stored at −80 °C and −20 °C retained acceptable stability, while storage at 5 °C caused aggregation, reduced in vivo expression, and mRNA degradation. Storage at 25 °C led to complete loss of transfection within six months. Mechanistic studies identified oxidative and hydrolytic lipid degradation (e.g., DSPC) in ALC-0315 formulations and MC3 N-oxidation with subvisible particulates in MC3-containing LNPs as primary failure modes. Increasing Tris buffer concentration accelerated 5′-cap hydrolysis, emphasizing the importance of a low-ionic-strength buffer for LNP formulations. Conclusions: Findings re-emphasize the necessity of deep-cold storage (≤−20 °C) and optimized formulation components to preserve mRNA–LNP integrity, offering insights for designing next-generation LNPs with improved shelf-life.

## Linked entities

- **Chemicals:** Dlin-MC3-DMA (PubChem CID 49785164), ALC-0315 (PubChem CID 122666778), ALC-0159 (PubChem CID 156598878), DSPC (PubChem CID 94190), Tris buffer (PubChem CID 6503)

## Full-text entities

- **Genes:** XRN1 (5'-3' exoribonuclease 1) [NCBI Gene 54464] {aka SEP1}, NUSAP1 (nucleolar and spindle associated protein 1) [NCBI Gene 51203] {aka ANKT, BM037, LNP, NUSAP, PRO0310p1, Q0310}
- **Diseases:** injury to (MESH:D014947)
- **Chemicals:** water (MESH:D014867), ethane (MESH:D004980), CO2 (MESH:D002245), F2 (MESH:D005461), polystyrene (MESH:D011137), ammonium acetate (MESH:C018824), Lipid (MESH:D008055), Sucrose (MESH:D013395), isoflurane (MESH:D007530), Nucleosides (MESH:D009705), F4 (MESH:C006011), ALC-0159 (MESH:C000712827), cytidine (MESH:D003562), copper (MESH:D003300), guanosine (MESH:D006151), isopropanol (MESH:D019840), ribose (MESH:D012266), ethanol (MESH:D000431), Cholesterol (MESH:D002784), aldehyde (MESH:D000447), Dulbecco's Modified Eagle's Medium (-), MgCl2 (MESH:D015636), Adenosine (MESH:D000241), NaCl (MESH:D012965), ammonium formate (MESH:C030544), sodium citrate (MESH:D000077559), 1,2-dimyristoyl-rac-glycero-3-methoxypolyethylene glycol-2000 (MESH:C000626005), DSPC (MESH:C010942), uridine (MESH:D014529), peroxides (MESH:D010545), Tris (MESH:D014325), EDTA (MESH:D004492), PEG (MESH:D011092), ZnCl2 (MESH:C016837), N (MESH:D009584), ALC-0315 (MESH:C000712847), acetonitrile (MESH:C032159), Triton x-100 (MESH:D017830), D-luciferin (MESH:C532924), carbon (MESH:D002244)
- **Species:** Respiratory syncytial virus (no rank) [taxon 12814], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** MC3 — Mus musculus (Mouse), Hybridoma (CVCL_A2IT), CRL-1573 — Sigmodon hispidus (Hispid cotton rat), Spontaneously immortalized cell line (CVCL_YD58), HEK-293 — Homo sapiens (Human), Transformed cell line (CVCL_0045)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12942733/full.md

## References

23 references — full list in the complete paper: https://tomesphere.com/paper/PMC12942733/full.md

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Source: https://tomesphere.com/paper/PMC12942733