# Distinctive Microbial Processes and Controlling Factors of Nitrous Oxide Emission in an Agricultural River Network: Perspective in Riparian Zone Type and Season

**Authors:** Zhangmu Jing, Shengqiang Tu, Hongjie Gao, Qingqian Li

PMC · DOI: 10.3390/microorganisms14020479 · Microorganisms · 2026-02-16

## TL;DR

This study explores how different riverbank types and seasons affect nitrous oxide emissions in agricultural rivers, focusing on microbial processes.

## Contribution

The study identifies riparian zone type and season as key factors influencing microbial processes and N2O emissions in agricultural river networks.

## Key findings

- N2O emissions were significantly higher in spring compared to autumn.
- Natural riparian zones emitted more N2O than artificial ones in spring.
- Wind-based models overestimated N2O emissions due to inflated IPCC factors.

## Abstract

The emission of nitrogen oxides (N2O) in rivers is an important source of potent greenhouse gases. However, the mechanism at the interface between rivers and riverbanks remains unclear. This study quantified N2O emissions from natural and artificial riparian zones across seasons and explored the microbial mechanisms affecting N2O production and consumption in an intensive agricultural river network in China. Significant seasonal variability in N2O emission rates was observed (p < 0.05), with mean values of 0.56 ± 0.09 mmol·m−2·h−1 in autumn and 1.13 ± 0.32 mmol·m−2·h−1 in spring. In spring, emissions from natural riparian zones (1.38 ± 0.28 mmol·m−2·h−1) were significantly higher than those from artificial riparian zones (0.89 ± 0.05 mmol·m−2·h−1). All wind-based models significantly overestimated N2O emissions (p < 0.05) due to inflated IPCC emission factors (EF5r), exceeding measured values by 1.76–3.09 times. Dissolved organic carbon and nitrite nitrogen were identified as key environmental drivers of N2O emissions. Nitrogen fixation and ammonification accounted for 82.3% of N2O production. Network analysis revealed a dominant microbial niche containing nitrifiers, sulfate-reducing bacteria, and carbohydrate-degrading taxa. Partial least squares path modeling indicated that riparian zone type altered DOC and NO2− availability, regulated nifH and ureC gene abundances, and enhanced N2O production. These findings underscore the importance of riparian-zone-specific microbial regulation of riverine N2O emissions and demonstrate the necessity of refining EF5r estimates for agricultural river networks.

## Linked entities

- **Genes:** nifH (nitrogenase iron protein) [NCBI Gene 1451768], ureC (urease subunit alpha) [NCBI Gene 878240]

## Full-text entities

- **Genes:** NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}, MND1 (meiotic nuclear divisions 1) [NCBI Gene 84057] {aka GAJ}, nitrate-reductase [NCBI Gene 5722285]
- **Diseases:** injury to (MESH:D014947)
- **Chemicals:** DOC (MESH:D000090422), ammonia (MESH:D000641), oxygen (MESH:D010100), Sulfate (MESH:D013431), nitrate (MESH:D009566), phosphorus (MESH:D010758), phosphate (MESH:D010710), N (MESH:D009584), NO2 (MESH:D009585), ammonium (MESH:D064751), C (MESH:D002244), greenhouse gas (MESH:D000074382), Water (MESH:D014867), TIN (MESH:D014001), NO3- (MESH:C038619), NO (MESH:D009614), ozone (MESH:D010126), N2O-N (-), nitrite (MESH:D009573), carbohydrate (MESH:D002241), CO2 (MESH:D002245), nitrogen oxides (MESH:D009589), N2O (MESH:D009609)
- **Species:** Chlamydomonas (genus) [taxon 3052], Nitrosospira (genus) [taxon 35798], Flavobacterium (genus) [taxon 237], Alsobacter (genus) [taxon 1502180], Hydrogenophaga (genus) [taxon 47420], Nitrosomonas (genus) [taxon 914], Cyanobacteriota (blue-green algae, phylum) [taxon 1117], Geothermobacter (genus) [taxon 213223], Nitrospiria (class) [taxon 203693], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Arenimonas (genus) [taxon 490567], Rhodobacter (genus) [taxon 1060], Actinomycetota (actinobacteria, phylum) [taxon 201174], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Limnohabitans (genus) [taxon 665874], Homo sapiens (human, species) [taxon 9606], Desulfatiglans (genus) [taxon 1549126], Methylocystis (genus) [taxon 133], Clostridium (genus) [taxon 1485], Mycobacterium (genus) [taxon 1763], Nitrosomonadales (order) [taxon 32003], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Ammonia (genus) [taxon 29189]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12942671/full.md

## References

56 references — full list in the complete paper: https://tomesphere.com/paper/PMC12942671/full.md

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Source: https://tomesphere.com/paper/PMC12942671