# A Dive into the Invisible: The Vaginal and Endometrial Microbiota in Gynecologic and Obstetric Disorders: A Narrative Review

**Authors:** Giorgia Schettini, Emilio Pieri, Cristina Rizzo, Matteo Giorgi, Virginia Mancini, Nassir Habib, Ramon Rovira, Gabriele Centini

PMC · DOI: 10.3390/life16020344 · Life · 2026-02-17

## TL;DR

This review explores how changes in the vaginal and endometrial microbiota are linked to various gynecologic and pregnancy-related disorders.

## Contribution

The paper integrates current evidence on microbiota's role in reproductive health into a clinically relevant framework.

## Key findings

- Microbiota alterations are associated with conditions like endometriosis, infertility, and preterm birth.
- Dysbiosis and the gut estrobolome influence estrogen metabolism and reproductive health.
- Therapeutic strategies like probiotics and microbiota-based interventions show potential but require more research.

## Abstract

The human microbiota is increasingly recognized as a key component of women’s reproductive health. This narrative review examines the vaginal, endometrial, and gut microbiota and their roles in the pathogenesis of gynecologic and obstetric disorders, aiming to integrate current evidence into a clinically relevant framework. We review intrinsic (genetic, hormonal, and immunological) and extrinsic (environmental, lifestyle, and pharmacological) factors shaping microbial composition, with particular focus on dysbiosis and the role of the gut estrobolome within the microbiome in estrogen metabolism. The review synthesizes data on microbiota alterations associated with endometriosis, adenomyosis, uterine fibroids, endometrial polyps and hyperplasia, gynecologic malignancies, pelvic inflammatory disease, bacterial vaginosis, infertility, and adverse obstetric outcomes, including preterm birth and fetal growth restriction. Methodological approaches used to characterize the reproductive tract microbiota, such as vaginal swabs, endometrial sampling, and fecal analysis, are critically discussed, together with limitations related to low-biomass environments and contamination risk. Evidence regarding therapeutic modulation of the microbiota, including antibiotics, probiotics, hormonal therapies, and emerging microbiota-based interventions, is summarized, alongside the impact of gynecologic surgery on microbial translocation and long-term microbial balance. Overall, the available literature supports an association between microbiota alterations and multiple reproductive conditions, although causality remains incompletely established. Further standardized and longitudinal studies are needed to clarify mechanisms and guide microbiota-informed diagnostic and therapeutic strategies.

## Linked entities

- **Diseases:** endometriosis (MONDO:0005133), adenomyosis (MONDO:0010888), pelvic inflammatory disease (MONDO:0000922), bacterial vaginosis (MONDO:0005316), fetal growth restriction (MONDO:0005030)

## Full-text entities

- **Genes:** NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513] {aka COII, MTCO2}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}
- **Diseases:** ectopic lesion (MESH:C566852), chronic pelvic pain (MESH:D011472), IVF (MESH:C566179), chronic (MESH:D002908), chorioamnionitis (MESH:D002821), preterm labor (MESH:D007752), HIV (MESH:D015658), immune dysregulation (OMIM:614878), ovarian carcinogenesis (MESH:D010049), Ovarian Cancer (MESH:D010051), constipation (MESH:D003248), UFs (MESH:D007889), Fibromatosis (MESH:D005350), IBS (MESH:D043183), EPs (MESH:D014591), Gynecological Disorders (MESH:D005831), IBD (MESH:D015212), endometrial polyps and hyperplasia (MESH:D004714), polyp (MESH:D011127), miscarriage (MESH:D000022), PROM (MESH:D005322), vulvovaginal candidiasis (MESH:D002181), Obstetric Complications (MESH:D007744), genital infections (MESH:D007239), preterm birth (MESH:D047928), gynecologic malignancies (MESH:D005833), Infertility (MESH:D007246), gastrointestinal disorders (MESH:D005767), immunity (MESH:D007154), EC (MESH:D016889), pelvic pain (MESH:D017699), ascites (MESH:D001201), Clostridioides difficile infection (MESH:D003015), epithelial dysfunction (MESH:D009375), Neisseria gonorrhoeae (MESH:D006069), inflammatory and metabolic diseases (MESH:D008659), genital tract infection (MESH:D060737), estrogen-dependent disorders (MESH:D003859), vitamin D (MESH:D014808), cervical carcinogenesis (MESH:D063646), diarrhea (MESH:D003967), PID (MESH:D000292), Adenomyosis (MESH:D062788), obesity (MESH:D009765), bleeding (MESH:D006470), GDM (MESH:D016640), preeclampsia (MESH:D011225), STIs (MESH:C562694), impaired (MESH:D060825), STI (MESH:D012749), Cancer (MESH:D009369), Microbial Dysbiosis (MESH:D064806), Cervical Cancer (MESH:D002583), BV (MESH:D016585), Endometriosis (MESH:D004715), cervical inflammation (MESH:D007249), injury to (MESH:D014947), benign disease (MESH:D004194), fetal growth restriction (MESH:D005317), metabolic syndrome (MESH:D024821)
- **Chemicals:** reactive oxygen species (MESH:D017382), SCFA (MESH:D005232), LPS (MESH:D008070), lysophospholipids (MESH:D008246), Estrobolome (-), bile acid (MESH:D001647), Lysophosphatidic acid (MESH:C032881), inulin (MESH:D007444), glycogen (MESH:D006003), FOS (MESH:C116580), Metronidazole (MESH:D008795), E2 (MESH:D004958), lactic acid (MESH:D019344), sugar (MESH:D000073893), succinate (MESH:D019802), Vitamin D (MESH:D014807)
- **Species:** Lactobacillus crispatus (species) [taxon 47770], Finegoldia (genus) [taxon 150022], Fusobacterium ulcerans (species) [taxon 861], Ureaplasma (genus) [taxon 2129], Pseudomonas (RNA similarity group I, genus) [taxon 286], Propionibacterium (genus) [taxon 1743], Streptococcus agalactiae (species) [taxon 1311], Peptostreptococcus (genus) [taxon 1257], Anaerococcus vaginalis (species) [taxon 33037], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Shigella (genus) [taxon 620], Homo sapiens (human, species) [taxon 9606], Clostridioides difficile (species) [taxon 1496], Bifidobacterium (genus) [taxon 1678], Mobiluncus (genus) [taxon 2050], Lactobacillus iners (species) [taxon 147802], Staphylococcus (genus) [taxon 1279], Bacteroides fragilis (species) [taxon 817], Fannyhessea vaginae (species) [taxon 82135], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Methylobacterium (genus) [taxon 407], Lactobacillus gasseri (species) [taxon 1596], Akkermansia muciniphila (species) [taxon 239935], Corynebacterium (genus) [taxon 1716], Prevotella bivia (species) [taxon 28125], Ruminococcus (genus) [taxon 1263], Sneathia sanguinegens (species) [taxon 40543], Peptoniphilus (genus) [taxon 162289], Penicillium (genus) [taxon 5073], Chlamydia trachomatis (species) [taxon 813], Enterococcus (genus) [taxon 1350], Lactobacillus jensenii (species) [taxon 109790], Veillonellaceae (family) [taxon 31977], Bacteroides sp. (species) [taxon 29523], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Sphingomonas (genus) [taxon 13687], Gardnerella vaginalis (species) [taxon 2702], Mycoplasma (genus) [taxon 2093], Lactobacillus crispatus CTV-05 (strain) [taxon 440496], Human papillomavirus (species) [taxon 10566], Porphyromonas somerae (species) [taxon 322095], Acinetobacter (genus) [taxon 469], Aerococcus (genus) [taxon 1375], Escherichia coli (E. coli, species) [taxon 562], Comamonas (genus) [taxon 283], Candida albicans (species) [taxon 5476], Cutibacterium acnes (species) [taxon 1747]

## Full text

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## References

105 references — full list in the complete paper: https://tomesphere.com/paper/PMC12942613/full.md

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Source: https://tomesphere.com/paper/PMC12942613