# Extremophilic Yeasts as Next-Generation Eukaryotic Models: Mechanisms of Stress Integration, Systems Biology and Biotechnological Applications: A Review

**Authors:** Francisco Padilla-Garfias, Antonio Peña

PMC · DOI: 10.3390/jof12020092 · 2026-01-29

## TL;DR

This paper reviews extremophilic yeasts as new eukaryotic models for studying stress adaptation and their potential in biotechnology.

## Contribution

The paper highlights extremophilic yeasts as next-generation models for systems-level stress integration and biotechnological innovation.

## Key findings

- Extremophilic yeasts exhibit unique stress adaptation mechanisms through coordinated signaling and metabolism.
- These yeasts have potential applications in bioremediation, industrial processes, and space biotechnology.
- The paper identifies key challenges and future directions for using extremophiles in systems biology.

## Abstract

Fungi, including yeasts, have played a central role in the development of knowledge about cell physiology and molecular biology as experimental eukaryotic models. However, much of this knowledge has been generated using classical organisms such as Saccharomyces cerevisiae, which display inherent limitations, as many cellular processes operate under extreme conditions, including high salinity, extreme pH, oxidative stress, exposure to toxic compounds, and temperature fluctuations. In this context, extremophilic and extremotolerant yeasts have emerged as complementary systems with strong potential for basic research and biotechnological applications. This review integrates recent advances in the taxonomic diversity, ecology, physiology, molecular mechanisms, and omics-based analyses of extremophilic yeasts, with a particular focus on how these organisms achieve stress integration through coordinated regulation of signaling pathways, metabolism, and organelle function. We discuss representative applications in environmental toxicology, bioremediation, and industrial bioprocesses, as well as their relevance in the context of climate change and space biotechnology. Finally, we outline key conceptual and methodological challenges and propose future perspectives that position extremophilic yeasts as next-generation eukaryotic models for investigating adaptation as a systems-level, constitutive cellular state under complex and dynamic stress conditions.

## Linked entities

- **Species:** Saccharomyces cerevisiae (taxon 4932)

## Full-text entities

- **Genes:** ERG3 (C-5 sterol desaturase) [NCBI Gene 850745] {aka PSO6, SYR1}, FLO11 (Flo11p) [NCBI Gene 854836] {aka MUC1, STA4}, PDR18 (ATP-binding cassette multidrug transporter PDR18) [NCBI Gene 855807], HSF1 (stress-responsive transcription factor HSF1) [NCBI Gene 852806] {aka EXA3, MAS3}, SWI6 (transcriptional regulator SWI6) [NCBI Gene 850879] {aka PSL8, SDS11}, NHA1 (Nha1p) [NCBI Gene 850829], STL1 (glucose-inactivated glycerol proton symporter STL1) [NCBI Gene 852149], PMA1 (H(+)-exporting P2-type ATPase PMA1) [NCBI Gene 852876] {aka KTI10}, ZWF1 (glucose-6-phosphate dehydrogenase) [NCBI Gene 855480] {aka MET19, POS10}, ERG5 (C-22 sterol desaturase) [NCBI Gene 855029] {aka CYP61}, HSP104 (chaperone ATPase HSP104) [NCBI Gene 850633], HYR1 (peroxiredoxin HYR1) [NCBI Gene 854855] {aka GPX3, ORP1}, TAL1 (sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate transaldolase TAL1) [NCBI Gene 851068], AIM14 (putative metalloreductase) [NCBI Gene 852716] {aka YNO1}, HSP82 (Hsp90 family chaperone HSP82) [NCBI Gene 855836] {aka HSP90}, CCP1 (cytochrome-c peroxidase) [NCBI Gene 853940], ERG4 (delta(24(24(1)))-sterol reductase) [NCBI Gene 852872], HOG1 (mitogen-activated protein kinase HOG1) [NCBI Gene 850803] {aka SSK3}, YAP1 (DNA-binding transcription factor YAP1) [NCBI Gene 855005] {aka PAR1, PDR4, SNQ3}, RIM101 (alkaline-responsive transcriptional regulator RIM101) [NCBI Gene 856358] {aka RIM1}, FPS1 (Fps1p) [NCBI Gene 850683]
- **Diseases:** hypoxia (MESH:D000860), injury to (MESH:D014947), neurodegenerative diseases (MESH:D019636), metal (MESH:D013651), cancer (MESH:D009369), cytotoxicity (MESH:D064420)
- **Chemicals:** water (MESH:D014867), phytochelatins (MESH:D054811), carotenoid (MESH:D002338), glutathione (MESH:D005978), mannans (MESH:D008351), cysteine (MESH:D003545), Lipid (MESH:D008055), Fe (MESH:D007501), erythritol (MESH:D004896), melanin (MESH:D008543), sterol (MESH:D013261), KCl (MESH:D011189), Pb (MESH:D007854), sphingolipids (MESH:D013107), Cu (MESH:D003300), Cd (MESH:D002104), H+ (MESH:D006859), glucose (MESH:D005947), Mn (MESH:D008345), ethanol (MESH:D000431), glyoxylate (MESH:C031150), trehalose (MESH:D014199), Heavy metals (MESH:D019216), PAH (MESH:D011084), ROS (MESH:D017382), -metal (MESH:D008670), BioRender (-), hydrogen peroxide (MESH:D006861), benzo(a)pyrene (MESH:D001564), NaCl (MESH:D012965), unsaturated fatty acid (MESH:D005231), sugar (MESH:D000073893), K+ (MESH:D011188), proton (MESH:D011522), salt (MESH:D012492), Zn (MESH:D015032), Glycerol (MESH:D005990), Na+ (MESH:D012964), oxygen (MESH:D010100), Cr(VI) (MESH:C074702), Ni (MESH:D009532), polyols (MESH:C024617), peroxide (MESH:D010545), NADPH (MESH:D009249), ergosterol (MESH:D004875), Cr (MESH:D002857), Cl- (MESH:D002713), chitin (MESH:D002686), carbon (MESH:D002244), glucans (MESH:D005936), oils (MESH:D009821), pentose phosphate (MESH:D010428), fatty acids (MESH:D005227), Hydrocarbons (MESH:D006838)
- **Species:** Yarrowia (genus) [taxon 4951], Apiotrichum dulcitum (species) [taxon 82515], Kluyveromyces marxianus (species) [taxon 4911], Cystobasidium (genus) [taxon 203525], Rhodotorula mucilaginosa (species) [taxon 5537], Zygosaccharomyces mellis (species) [taxon 42258], Naganishia (genus) [taxon 1851509], Cryptococcus neoformans (Cryptococcus neoformans serotype A, species) [taxon 5207], Exophiala (genus) [taxon 5583], Mrakia (genus) [taxon 29901], Aureobasidium pullulans (species) [taxon 5580], Ogataea polymorpha (species) [taxon 460523], Glaciozyma antarctica (species) [taxon 105987], Vishniacozyma (genus) [taxon 1891946], Starmerella bacillaris (species) [taxon 1247836], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], Zygosaccharomyces rouxii (species) [taxon 4956], Debaryomyces hansenii (species) [taxon 4959], Wickerhamiella versatilis (species) [taxon 27304], Aureobasidium (genus) [taxon 5579], Zygosaccharomyces bailii (species) [taxon 4954], Pichia kudriavzevii (species) [taxon 4909], Leucosporidium scottii (species) [taxon 5278], Papiliotrema (genus) [taxon 189450], Cryomyces (genus) [taxon 329878], Yarrowia lipolytica (species) [taxon 4952], Knufia (genus) [taxon 430999], Lachancea thermotolerans (species) [taxon 381046], Hortaea (genus) [taxon 91942], Hortaea werneckii (species) [taxon 91943], Ogataea thermomethanolica (species) [taxon 310468], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Arxiozyma telluris (species) [taxon 36907], Wickerhamomyces anomalus (species) [taxon 4927], Homo sapiens (human, species) [taxon 9606]

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12942351/full.md

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Source: https://tomesphere.com/paper/PMC12942351