# Genetic Variants in Potassium Channel Genes and Their Clinical Implications in Kazakhstani Patients with Cardiac Arrhythmias

**Authors:** Ayaulym Chamoieva, Saule Rakhimova, Zhannur Abilova, Ainur Akhmetova, Gulbanu Akilzhanova, Madina Zhalbinova, Asset Daniyarov, Kenes Akilzhanov, Askhat Molkenov, Ulykbek Kairov, Anargul Kuanysheva, Nurlan Shaimardanov, Ayan Abdrakhmanov, Makhabbat Bekbossynova, Ainur Akilzhanova

PMC · DOI: 10.3390/jpm16020060 · 2026-01-26

## TL;DR

This study identifies genetic variants in potassium channel genes among Kazakhstani patients with cardiac arrhythmias, highlighting the importance of genetic testing for diagnosis and treatment.

## Contribution

The first genetic study of potassium channel gene mutations in Kazakhstani patients with cardiac arrhythmias.

## Key findings

- 52 variants were identified across 11 potassium channel genes in 79 patients.
- Two likely pathogenic variants and six variants of uncertain significance were detected.
- Two novel variants were found in KCNE5 and KCND3.

## Abstract

Background/Objectives: Cardiac arrhythmias are among the leading causes of sudden cardiac death (SCD). Pathogenic variants in potassium channel genes play a key role in inherited arrhythmia syndromes, yet their contribution in Central Asian populations remains poorly characterized. Methods: We performed targeted next-generation sequencing (NGS) using a 96-gene custom Haloplex panel in 79 Kazakhstani patients with clinically diagnosed arrhythmias, including atrioventricular block, sick sinus syndrome, and atrial fibrillation. Detected variants in potassium channel genes were classified according to ACMG guidelines and correlated with clinical phenotypes. Results: A total of 52 variants were identified across 11 potassium channel genes. Two likely pathogenic variants (KCNH2 p.Cys66Gly and p.Arg176Trp) and six variants of uncertain significance (VUS) in KCNQ1, KCNE2, KCNE3, and KCNJ8 were detected. Two novel previously unreported variants were found in KCNE5 and KCND3. Patients harboring pathogenic variants commonly presented with early-onset arrhythmias or a positive family history of cardiovascular disease. Carriers of KCNH2 variants exhibited mild QT prolongation and recurrent syncope. Conclusions: This is the first genetic study of potassium channel gene mutations in Kazakhstani patients with cardiac arrhythmias. The detection of pathogenic and novel variants highlights the clinical utility of integrating genetic testing into diagnostic and management pathways for arrhythmia syndromes. Population-specific genomic data are essential for improving risk stratification, guiding medication safety, and enabling cascade family screening in Central Asia.

## Linked entities

- **Genes:** KCNH2 (potassium voltage-gated channel subfamily H member 2) [NCBI Gene 3757], KCNQ1 (potassium voltage-gated channel subfamily Q member 1) [NCBI Gene 3784], KCNE2 (potassium voltage-gated channel subfamily E regulatory subunit 2) [NCBI Gene 9992], KCNE3 (potassium voltage-gated channel subfamily E regulatory subunit 3) [NCBI Gene 10008], KCNJ8 (potassium inwardly rectifying channel subfamily J member 8) [NCBI Gene 3764], KCNE5 (potassium voltage-gated channel subfamily E regulatory subunit 5) [NCBI Gene 23630], KCND3 (potassium voltage-gated channel subfamily D member 3) [NCBI Gene 3752]
- **Diseases:** atrioventricular block (MONDO:0000465), sick sinus syndrome (MONDO:0001823), atrial fibrillation (MONDO:0004981), sudden cardiac death (MONDO:0007264), cardiovascular disease (MONDO:0004995)

## Full-text entities

- **Genes:** KCNE2 (potassium voltage-gated channel subfamily E regulatory subunit 2) [NCBI Gene 9992] {aka ATFB4, LQT5, LQT6, MIRP1}, CYP2D6 (cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene)) [NCBI Gene 1565] {aka CPD6, CYP2D, CYP2D7AP, CYP2D7BP, CYP2D7P2, CYP2D8P2}, KCNH2 (potassium voltage-gated channel subfamily H member 2) [NCBI Gene 3757] {aka ERG-1, ERG1, H-ERG, HERG, HERG1, Kv11.1}, CYP3A4 (cytochrome P450 family 3 subfamily A member 4) [NCBI Gene 1576] {aka CP33, CP34, CYP3A, CYP3A3, CYPIIIA3, CYPIIIA4}, KCNA5 (potassium voltage-gated channel subfamily A member 5) [NCBI Gene 3741] {aka ATFB7, HCK1, HK2, HPCN1, KV1.5, PCN1}, KCNE3 (potassium voltage-gated channel subfamily E regulatory subunit 3) [NCBI Gene 10008] {aka BRGDA6, HOKPP, HYPP, MiRP2}, SCN5A (sodium voltage-gated channel alpha subunit 5) [NCBI Gene 6331] {aka CDCD2, CMD1E, CMPD2, HB1, HB2, HBBD}, KCNE1 (potassium voltage-gated channel subfamily E regulatory subunit 1) [NCBI Gene 3753] {aka ISK, JLNS, JLNS2, LQT2/5, LQT5, MinK}, KCND3 (potassium voltage-gated channel subfamily D member 3) [NCBI Gene 3752] {aka BRGDA9, KCND3L, KCND3S, KSHIVB, KV4.3, SCA19}, KCNQ1 (potassium voltage-gated channel subfamily Q member 1) [NCBI Gene 3784] {aka ATFB1, ATFB3, JLNS1, KCNA8, KCNA9, KVLQT1}, KCNE5 (potassium voltage-gated channel subfamily E regulatory subunit 5) [NCBI Gene 23630] {aka KCNE1L}, KCNJ8 (potassium inwardly rectifying channel subfamily J member 8) [NCBI Gene 3764] {aka KIR6.1, uKATP-1}
- **Diseases:** arrhythmia syndromes (MESH:D001145), DFP (MESH:D000092702), SCD (MESH:D016757), cardiomyopathies (MESH:D009202), arrhythmic disorders (OMIM:212500), ERS (OMIM:204690), rhythm disorders (MESH:D021081), OMIM (MESH:D030342), HGMD (MESH:C579880), SSS (MESH:D012804), syncope (MESH:D013575), conduction disorders (MESH:D019955), early repolarization syndrome (MESH:C580055), injury to (MESH:D014947), BrS (MESH:D053840), Hereditary arrhythmia syndromes (MESH:D009386), SQTS (MESH:C566506), malignant (MESH:D009369), IVF (MESH:C537182), DM (MESH:D009223), cardiac channelopathies (MESH:D053447), angina pectoris (MESH:D000787), cardiac arrest (MESH:D006323), OI (OMIM:613848), VUS (MESH:D065309), congestive heart failure (MESH:D006333), type 2 diabetes (MESH:D003924), ion channel dysfunction (MESH:D020513), torsades de pointes (MESH:D016171), CAD AF (MESH:D003324), heart disease (MESH:D006331), shorter QT intervals (OMIM:610141), LQTS (MESH:D008133), ventricular tachycardia (MESH:D017180), LQTS type 1 (MESH:D029597), Wolff-Parkinson-White (WPW) syndrome (MESH:D014927), Man (MESH:D016750), supraventricular tachyarrhythmia (MESH:D013617), death (MESH:D003643), AF (MESH:D001281), myocardial infarction (MESH:D009203), CVDs (MESH:D002318), AV block (MESH:D054537), AV-reentry tachycardia (MESH:D013611)
- **Chemicals:** agarose (MESH:D012685), QT (-), potassium (MESH:D011188), macrolide (MESH:D018942), AA (MESH:D000596), fluoroquinolone antibiotics (MESH:D024841)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** T4A, c.1128+4C>T, rs12720457, Tyr652Ter, Rs1805123, c.29C>A, rs1161907, Pro448Arg, Ser38Gly, Rs36210422, rs2270676, Thr10Met, Glu282Gln, c.1928C>A, glutamine with histidine, p.Cys66Gly, Tyr662Ter, Tyr81His, c.378G>T, Rs173135, p.Gln126His, proline with a histidine, c.1033-4C>T, Pro307Ser, c.263C>G, c.1145A>G, Arg1047Leu, p.Pro643His

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Source: https://tomesphere.com/paper/PMC12942129