# Novel Metabolites of Xylaria thienhirunae SWUF17-44.1 with Biological Activities and Molecular Docking Analysis

**Authors:** Pitchapa Thongsuwan, Lutfun Nahar, Satyajit D. Sarker, Pitchaya Kongmaung, Kiattawee Choowongkomon, Cherdchai Phosri, Nuttika Suwannasai

PMC · DOI: 10.3390/jof12020093 · 2026-01-30

## TL;DR

A new fungus produces bioactive compounds with strong antibacterial and antioxidant properties, especially against Gram-positive bacteria.

## Contribution

Discovery of two novel metabolites with potent antimicrobial activity and strong in silico interactions with bacterial targets.

## Key findings

- Extract showed strong antimicrobial activity against Gram-positive bacteria with MICs as low as 0.63 µg/µL.
- Two novel compounds, xylerithienol and xylerithiether, exhibited antibacterial activity and strong in silico docking with bacterial targets.
- Xylerithiether outperformed norfloxacin and fluconazole in inhibiting specific bacterial enzymes.

## Abstract

The extract of Xylaria thienhirunae SWUF17-44.1 displayed broad-spectrum antimicrobial activity, with higher potency against Gram-positive bacteria than Gram-negative strains. Minimum inhibitory concentration (MIC) values were as low as 0.63 µg/µL for Staphylococcus aureus and 1.25 µg/µL for Bacillus subtilis, whereas higher values were observed for Escherichia coli and Pseudomonas aeruginosa. The extract also inhibited fungal growth, with MICs of 6.25 μg/μL against Candida albicans and C. tropicalis. Strong antioxidant activity was observed (DPPH IC50 = 0.706 ± 0.022 μg/μL; ABTS IC50 = 0.251 ± 0.019 μg/μL), correlated with high phenolic content. Moderate anti-inflammatory activity was confirmed via nitric oxide inhibition. LC-MS profiling indicated diverse metabolites, including phenolic derivatives, aminoglycoside-like compounds, and annotated bioactive molecules. Chromatographic isolation yielded four compounds: 4-(2,3-dihydroxypropoxy)benzoic acid, 4-prenyloxybenzoic acid, and two novel metabolites, xylerithienol and xylerithiether. In silico docking predicted strong interactions of the novel compounds with bacterial targets such as muramyl ligases, DNA gyrase B, and β-ketoacyl-ACP synthase III. Notably, xylerithiether outperformed norfloxacin against DNA gyrase B and fluconazole against sterol 14-α-demethylase. In vitro antibacterial activity was assessed for the purified compounds; all were active, predominantly against Gram-positive bacteria. These finding position X. thienhirunae SWUF17-44.1 as a promising source of bioactive metabolites and potential scaffolds for antimicrobial drug discovery.

## Linked entities

- **Chemicals:** 4-(2,3-dihydroxypropoxy)benzoic acid (PubChem CID 20148), 4-prenyloxybenzoic acid (PubChem CID 267137), norfloxacin (PubChem CID 4539), fluconazole (PubChem CID 3365), ABTS (PubChem CID 35688)
- **Species:** Staphylococcus aureus (taxon 1280), Bacillus subtilis (taxon 1423), Escherichia coli (taxon 562), Pseudomonas aeruginosa (taxon 287), Candida albicans (taxon 5476), Candida tropicalis (taxon 5482)

## Full-text entities

- **Diseases:** deaths (MESH:D003643), injury to (MESH:D014947), Inflammatory (MESH:D007249), cytotoxic (MESH:D064420), microbial infections (MESH:D015163), chronic (MESH:D002908), infectious disease (MESH:D003141), fungal (MESH:D009181)
- **Chemicals:** p-acetamidophenol (MESH:D000082), Na (MESH:D012964), Gallic acid (MESH:D005707), Protoporphyrin IX (MESH:C028025), isoniazid (MESH:D007538), bassianolide (MESH:C035050), benzophenones (MESH:D001577), formic acid (MESH:C030544), octylamine (MESH:C008699), compounds (MESH:D015215), 5-aminoimidazole (MESH:C098330), aminoglycoside (MESH:D000617), westiellamide (MESH:C074972), methanol (MESH:D000432), cytochalasin D (MESH:D015638), KT30 (MESH:C116093), 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (MESH:C010643), 2-(4-Methyl-5-thiazolyl)ethylbutanoate (-), Ethyl acetate (MESH:C007650), naringin (MESH:C005274), adenosine (MESH:D000241), C (MESH:D002244), Streptomycin (MESH:D013307), fatty acid (MESH:D005227), nitramine (MESH:C015384), tiliroside (MESH:C052083), azole (MESH:D001393), essential fatty acids (MESH:D005228), 2,2-Diphenyl-1-picrylhydrazyl (MESH:C004931), fluoroquinolone (MESH:D024841), acetonitrile (MESH:C032159), chitin (MESH:D002686), TFA (MESH:D014269), agar (MESH:D000362), mycolic acid (MESH:D009171), ergosterol (MESH:D004875), sulfonamide (MESH:D013449), norfloxacin (MESH:D009643), 2'-deoxyguanosine (MESH:D003849), sesquiterpenoids (MESH:D012717), Na2CO3 (MESH:C005686), C-6 (MESH:C117224), terpenoids (MESH:D013729), LPS (MESH:D008070), Novobiocin (MESH:D009675), aminoparathion (MESH:C016224), lipid (MESH:D008055), nucleotide (MESH:D009711), Fe (MESH:D007501), ABTS (MESH:C002502), Griess reagent (MESH:C095000), lupinine (MESH:C015971), tetrahydrofolate (MESH:C030371), free radical (MESH:D005609), prednisone (MESH:D011241), vidarabine (MESH:D014740), Ampicillin (MESH:D000667), xanthones (MESH:D044004), water (MESH:D014867), resazurin (MESH:C005843)
- **Species:** Ficus pumila (climbing fig, species) [taxon 66386], Escherichia coli (E. coli, species) [taxon 562], Bacillus subtilis (species) [taxon 1423], Xylaria polymorpha (dead man's fingers, species) [taxon 77046], Candida albicans (species) [taxon 5476], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Paraconiothyrium brasiliense (species) [taxon 300254], Candida [taxon 1535326], Homo sapiens (human, species) [taxon 9606], Colletotrichum gloeosporioides (species) [taxon 474922], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Xylaria hypoxylon (candlesnuff fungus, species) [taxon 37992], Pseudomonas aeruginosa (species) [taxon 287], Xylaria nigripes (species) [taxon 490159], Staphylococcus aureus (species) [taxon 1280], Xylaria chaiyaphumensis (species) [taxon 2870653], Xylaria thienhirunae (species) [taxon 2870664], Diaporthe perseae (species) [taxon 291058], Xylaria sp. (species) [taxon 1715255], Xylaria vinacea (species) [taxon 2870665], Xylaria subintraflava (species) [taxon 2870663], Xylaria psidii (species) [taxon 364009]
- **Cell lines:** SWUF17 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_8991), SWUF17-44.1 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_XM59), RAW264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), FPL-25 — Homo sapiens (Human), Gastric tubular adenocarcinoma, Cancer cell line (CVCL_W522)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12942104/full.md

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Source: https://tomesphere.com/paper/PMC12942104