# Phaeodactylum tricornutum as a Chassis: Insights into Its Potential, Challenges, and Perspectives

**Authors:** Sen Wang, Yunuo Hao, Tengsheng Qiao, Ruihao Zhang, Deliang Yu, Hailiang Wang, Yongliang Liu, Yuhao Sun, Di Xu, Xiaojin Song, Kehou Pan

PMC · DOI: 10.3390/md24020079 · 2026-02-13

## TL;DR

This paper reviews Phaeodactylum tricornutum's potential as a microalgal chassis for producing valuable compounds and outlines strategies and challenges for its industrial use.

## Contribution

The paper systematically compiles strain improvement methods and cultivation optimizations for P. tricornutum, highlighting its biomanufacturing potential.

## Key findings

- P. tricornutum has a complete genome and DNA tools that support its use as a bioproduction chassis.
- Optimization of cultivation conditions like light and nutrients can enhance growth and product synthesis.
- Challenges in industrial application are identified to guide future research and application expansion.

## Abstract

Phaeodactylum tricornutum is one of the most well-characterized microalgae and serves as a pivotal model diatom in global carbon fixation and the mediation of biogeochemical cycling of essential nutrients. Over the past few decades, the availability of a complete genome assembly, coupled with the development of robust DNA manipulation tools and efficient DNA delivery methodologies, has established P. tricornutum as a promising photosynthetic chassis for the sustainable bioproduction of high-value compounds, including fucoxanthin and eicosapentaenoic acid (EPA). This review systematically summarizes the research progress in the strain improvement toolkit of P. tricornutum, encompassing both genetic and non-genetic engineering strategies. It elaborates on the types and applications of its representative bioactive products, as well as the molecular mechanisms underlying key synthetic pathways. Additionally, this work synthesizes the research findings on the optimization of critical cultivation conditions (e.g., light, temperature, and nutrient composition) that modulate the growth and product synthesis of P. tricornutum. On this basis, the challenges encountered by P. tricornutum in industrial applications are proposed for further discussion, aiming to provide a reference for in-depth exploration of related research directions and facilitate the expansion of its application scope in the field of biomanufacturing.

## Linked entities

- **Chemicals:** fucoxanthin (PubChem CID 5281239), eicosapentaenoic acid (PubChem CID 5282847), EPA (PubChem CID 446284)
- **Species:** Phaeodactylum tricornutum (taxon 2850)

## Full-text entities

- **Genes:** acyl carrier protein [NCBI Gene 4524607]
- **Diseases:** depression (MESH:D003866), fatty liver (MESH:D005234), tumor (MESH:D009369), injury to (MESH:D014947)
- **Chemicals:** glucose (MESH:D005947), phytoene (MESH:C100185), phleomycin (MESH:D010692), acetate (MESH:D000085), xanthophyll (MESH:D024341), membrane lipids (MESH:D008563), IPP (MESH:C004809), DAG (MESH:D004075), lipid (MESH:D008055), beta-carotene (MESH:D019207), betulin (MESH:C002503), vitamin B12 (MESH:D014805), sterol (MESH:D013261), fructose (MESH:D005632), PHB (MESH:C003182), CO2 (MESH:D002245), 2-C-methylerythritol 4-phosphate (MESH:C114232), farnesyl diphosphate (MESH:C004808), galactolipid (MESH:D038983), TFA (MESH:D014269), LPA (MESH:D010649), diatoxanthin (MESH:C103105), carbohydrates (MESH:D002241), HCO3- (MESH:D001639), fatty acid (MESH:D005227), acyl-CoA (MESH:D000214), NADPH (MESH:D009249), urea (MESH:D014508), silica (MESH:D012822), PUFAs (MESH:D005231), glycerol (MESH:D005990), chlorophyll c (MESH:C064041), violaxanthin (MESH:C005613), silicon (MESH:D012825), C16:0 (-), geranylgeranyl diphosphate (MESH:C002963), C16:1 n7 (MESH:C008757), diadinoxanthin (MESH:C033808), lysophosphatidic acid (MESH:C032881), Fucoxanthin (MESH:C025164), neoxanthin (MESH:C011947), fish oil (MESH:D005395), MGDG (MESH:C009909), free fatty acids (MESH:D005230), sodium metasilicate (MESH:C025349), geranyl diphosphate (MESH:C511282), acetyl-CoA (MESH:D000105), polyhydroxybutyrate (MESH:C000720856), phosphatidylglycerol (MESH:D010715), nourseothricin (MESH:D013309), isoprenoid (MESH:D013729), all-trans-lycopene (MESH:D000077276), phospholipids (MESH:D010743), EPA (MESH:D015118), carotenoid (MESH:D002338), glycerol-3-phosphate (MESH:C029620), TAG (MESH:D014280), agar (MESH:D000362), chlorophyll (MESH:D002734), phosphatidic acid (MESH:D010712)
- **Species:** Phaeodactylum tricornutum (species) [taxon 2850], PX clade (clade) [taxon 569578], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Ganoderma lucidum (species) [taxon 5315], Cylindrotheca closterium (species) [taxon 2856], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Yarrowia lipolytica (species) [taxon 4952], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** L
- **Cell lines:** pPhaT-1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12942017/full.md

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Source: https://tomesphere.com/paper/PMC12942017