# Single-Nucleus RNA Sequencing Reveals SPP1+ Macrophages Induce Cardiomyocyte Apoptosis to Promote Atrial Fibrillation Susceptibility

**Authors:** Weixue Wang, Youzheng Dong, Hong Yi, Lei He, Yuwen Jiang, Lu Long, Zhen Xia, Juxiang Li

PMC · DOI: 10.3390/jcdd13020080 · 2026-02-05

## TL;DR

This study shows that SPP1+ macrophages in heart tissue cause heart cell death, increasing the risk of atrial fibrillation.

## Contribution

The novel finding is that SPP1+ macrophages induce cardiomyocyte apoptosis via PI3K/AKT pathway downregulation, promoting atrial fibrillation.

## Key findings

- SPP1+ macrophages are significantly increased in atrial tissues of AF patients and communicate strongly with cardiomyocytes.
- SPP1+ macrophages induce cardiomyocyte apoptosis by downregulating the PI3K/AKT pathway.
- Activating the PI3K/AKT pathway reverses apoptosis caused by SPP1+ macrophages in co-culture experiments.

## Abstract

Atrial fibrillation (AF) is closely linked to atrial remodeling, while its underlying immune mechanisms remain elusive. This study sought to investigate the role of SPP1+ macrophages in the development and progression of AF and further elucidate the underlying mechanisms. Single-nucleus RNA sequencing was performed on right atrial tissues from 3 patients with persistent AF and 3 with sinus rhythm (all with rheumatic valvular heart disease). The results revealed significant immune cell infiltration in AF atrial tissues, with a marked increase in the proportion of SPP1+ macrophages, which exhibited the strongest intercellular communication with cardiomyocytes. Phenotypic scoring indicated that apoptosis was the dominant mode of cardiomyocyte death in AF. Immunohistochemical and Western blot analyses confirmed elevated levels of pro-apoptotic proteins (Bax, Cleaved-Caspase3) and reduced levels of the anti-apoptotic protein Bcl2 in AF tissues. In a mouse model with macrophage-specific SPP1 overexpression, increased AF inducibility and duration were observed, accompanied by enhanced cardiomyocyte apoptosis. In vitro co-culture experiments using SPP1-overexpressing RAW264.7 macrophages and HL-1 cardiomyocytes confirmed that SPP1+ macrophages could induce cardiomyocyte apoptosis. Mechanistically, KEGG and GSEA analyses identified downregulation of the PI3K/AKT pathway in AF. Treatment with the PI3K/AKT activator Recilisib reversed apoptosis and restored p-PI3K/p-AKT levels in HL-1 cells co-cultured with SPP1-overexpressing RAW264.7 macrophages. These findings demonstrate that SPP1+ macrophages accumulate in atrial tissues of AF patients and induce cardiomyocyte apoptosis by downregulating the PI3K/AKT pathway, thereby increasing AF susceptibility.

## Linked entities

- **Genes:** SPP1 (secreted phosphoprotein 1) [NCBI Gene 6696], BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581], BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596], PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207]
- **Proteins:** SPP1 (secreted phosphoprotein 1), BAX (BCL2 associated X, apoptosis regulator), BCL2 (BCL2 apoptosis regulator), Akt (Akt kinase)
- **Chemicals:** Recilisib (PubChem CID 9884220)
- **Diseases:** atrial fibrillation (MONDO:0004981)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, BLK (BLK proto-oncogene, Src family tyrosine kinase) [NCBI Gene 640] {aka MODY11}, CCR2 (C-C motif chemokine receptor 2) [NCBI Gene 729230] {aka CC-CKR-2, CCR-2, CCR2A, CCR2B, CD192, CKR2}, TIMP1 (TIMP metallopeptidase inhibitor 1) [NCBI Gene 7076] {aka CLGI, EPA, EPO, HCI, TIMP, TIMP-1}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, Adgre1 (adhesion G protein-coupled receptor E1) [NCBI Gene 13733] {aka DD7A5-7, EGF-TM7, Emr1, F4/80, Gpf480, Ly71}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, CD14 (CD14 molecule) [NCBI Gene 929], CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, MRC1 (mannose receptor C-type 1) [NCBI Gene 4360] {aka CD206, CLEC13D, CLEC13DL, MMR, MRC1L1, bA541I19.1}, Bcl2 (B cell leukemia/lymphoma 2) [NCBI Gene 12043] {aka Bcl-2, C430015F12Rik, D630044D05Rik, D830018M01Rik}, TPSB2 (tryptase beta 2) [NCBI Gene 64499] {aka TPS2, tryptaseB, tryptaseC}, Itgb1 (integrin beta 1 (fibronectin receptor beta)) [NCBI Gene 16412] {aka 4633401G24Rik, CD29, Fnrb, Gm9863, gpIIa}, FCGR3A (Fc gamma receptor IIIa) [NCBI Gene 2214] {aka CD16-II, CD16A, FCG3, FCGR3, FCRIIIA, FcGRIIIA}, KLRD1 (killer cell lectin like receptor D1) [NCBI Gene 3824] {aka CD94}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, MS4A1 (membrane spanning 4-domains A1) [NCBI Gene 931] {aka B1, Bp35, CD20, CVID5, FMC7, LEU-16}, Anxa5 (annexin A5) [NCBI Gene 11747] {aka Anx5, CPB-I}, ASGR1 (asialoglycoprotein receptor 1) [NCBI Gene 432] {aka ASGPR, ASGPR1, CLEC4H1, HL-1}, Spp1 (secreted phosphoprotein 1) [NCBI Gene 20750] {aka 2AR, Apl-1, BNSP, BSPI, Bsp, ETA-1}, CD3D (CD3 delta subunit of T-cell receptor complex) [NCBI Gene 915] {aka CD3-DELTA, CD3DELTA, IMD19, T3D}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, WDFY4 (WDFY family member 4) [NCBI Gene 57705] {aka C10orf64}, Bax (BCL2-associated X protein) [NCBI Gene 12028], Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, NCAM1 (neural cell adhesion molecule 1) [NCBI Gene 4684] {aka CD56, MSK39, NCAM}, Anxa11os (annexin A11, opposite strand) [NCBI Gene 105245705] {aka Gm9872}, SPP1 (secreted phosphoprotein 1) [NCBI Gene 6696] {aka BNSP, BSPI, ETA-1, OPN}, C1QA (complement C1q A chain) [NCBI Gene 712] {aka C1QD1}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, CD3G (CD3 gamma subunit of T-cell receptor complex) [NCBI Gene 917] {aka CD3-GAMMA, CD3GAMMA, IMD17, T3G}, CD3E (CD3 epsilon subunit of T-cell receptor complex) [NCBI Gene 916] {aka CD3epsilon, IMD18, T3E, TCRE}, CD8B (CD8 subunit beta) [NCBI Gene 926] {aka CD8B1, CD8beta, LEU2, LY3, LYT3, Ly-3}, IGKC (immunoglobulin kappa constant) [NCBI Gene 3514] {aka HCAK1, IGKCD, Km}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, TPSAB1 (tryptase alpha/beta 1) [NCBI Gene 7177] {aka TPS1, TPS2, TPSB1, TPSB2, Tryptase-2}, S100A11 (S100 calcium binding protein A11) [NCBI Gene 6282] {aka HEL-S-43, MLN70, S100C}, CD96 (CD96 molecule) [NCBI Gene 10225] {aka TACTILE}
- **Diseases:** cardiomyocyte death (MESH:D003643), hypertension (MESH:D006973), AF (MESH:D001281), dilated cardiomyopathy (MESH:D002311), rheumatic (MESH:D012216), cytotoxic (MESH:D064420), heart failure (MESH:D006333), cardiac dysfunction (MESH:D006331), SR (MESH:C563907), necrotic (MESH:D009336), cognitive impairment (MESH:D003072), Cardiomyocyte Apoptosis (MESH:D065703), fibrosis (MESH:D005355), cardiomyocyte loss (MESH:D016388), inflammation (MESH:D007249), cardiomyocyte injury (MESH:D014947), atrial remodeling (MESH:D064752), rheumatic heart valve disease (MESH:D006349), arrhythmia (MESH:D001145), stroke (MESH:D020521)
- **Chemicals:** DMEM medium (-), H2O2 (MESH:D006861), hematoxylin (MESH:D006416), penicillin (MESH:D010406), oil (MESH:D009821), balsam (MESH:D001453), carbon dioxide (MESH:D002245), paraformaldehyde (MESH:C003043), polybrene (MESH:D006583), DAB (MESH:C000469), PVDF (MESH:C024865), PBS (MESH:D007854), Tween-20 (MESH:D011136), DAPI (MESH:C007293), NaCl (MESH:D012965), methanol (MESH:D000432), OptiPrep (MESH:C044834), paraffin (MESH:D010232), MgCl2 (MESH:D015636), PI (MESH:D010716), nitrogen (MESH:D009584), xylene (MESH:D014992), polyacrylamide (MESH:C016679), streptomycin (MESH:D013307), Triton X-100 (MESH:D017830), TRIzol (MESH:C411644), isoflurane (MESH:D007530), SDS (MESH:D012967), DTT (MESH:D004229), ethanol (MESH:D000431)
- **Species:** Homo sapiens (human, species) [taxon 9606], Adeno-associated virus (species) [taxon 272636], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** TCM13 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_7967), GNM46 — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_WL58), RAW264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), 6C — Rattus norvegicus (Rat), Rat malignant glioma, Cancer cell line (CVCL_0194)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12941992/full.md

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Source: https://tomesphere.com/paper/PMC12941992