# Redox–Genomic Crosstalk: Linking Oxidative Stress, Sperm DNA Fragmentation, and Epigenetics in Personalized Management of Male Infertility

**Authors:** Pallav Sengupta, Sulagna Dutta, Mohamed AlaaEldein Elsuity, Ramadan Saleh

PMC · DOI: 10.3390/jpm16020079 · 2026-02-01

## TL;DR

This paper explores how oxidative stress, DNA damage in sperm, and epigenetic changes are linked and how they can be used to personalize treatments for male infertility.

## Contribution

The paper synthesizes evidence on the interplay between oxidative stress, sperm DNA fragmentation, and epigenetics to guide personalized infertility management.

## Key findings

- Oxidative stress and sperm DNA fragmentation are strongly associated with poor fertility outcomes in assisted reproductive technologies.
- Testicular sperm use in cases of high sperm DNA fragmentation may improve ART outcomes, though safety data are limited.
- Advances in redox and genomic diagnostics offer new opportunities for precision-based interventions in male infertility.

## Abstract

Male infertility is increasingly recognized as a complex, multifactorial disorder that extends beyond abnormalities in conventional semen parameters. A growing body of evidence highlights oxidative stress, sperm DNA fragmentation (SDF), and epigenetic alterations as tightly interconnected mechanisms contributing to sperm dysfunction and impaired fertility. Reactive oxygen species, though vital for sperm maturation and signaling, can inflict extensive genomic and chromatin damage when their levels exceed the antioxidant capacity of the testis and seminal plasma. These redox-driven lesions not only compromise fertilization potential but may also influence embryonic development and offspring health. Clinical studies and meta-analyses consistently report that elevated SDF and redox imbalance are associated with reduced pregnancy and live birth rates, particularly in assisted reproductive technologies (ARTs). The use of testicular sperm in men with high ejaculated SDF appears to improve ART outcomes, although long-term safety data remain limited. Advances in redox and genomic diagnostics, including assays for oxidation–reduction potential, SDF, and sperm epigenetic profiling, have opened new avenues for precision-based andrology, enabling targeted antioxidant, metabolic, and surgical interventions. Nonetheless, methodological variability, lack of assay standardization, and insufficient longitudinal follow-up constrain the full clinical translation of these findings. This review synthesizes evidence linking OS, SDF, and epigenetic alterations, highlighting their mechanistic crosstalk and translational relevance in the personalized management of male infertility.

## Linked entities

- **Diseases:** male infertility (MONDO:0005372)

## Full-text entities

- **Genes:** ARG2 (arginase 2) [NCBI Gene 384], SNRPN (small nuclear ribonucleoprotein polypeptide N) [NCBI Gene 6638] {aka HCERN3, PWCR, RT-LI, SM-D, SMN, SNRNP-N}, MTHFR (methylenetetrahydrofolate reductase) [NCBI Gene 4524], PRM1 (protamine 1) [NCBI Gene 5619] {aka CT94.1, P1}, cytochrome P450 [NCBI Gene 107819388], OGG1 (8-oxoguanine DNA glycosylase) [NCBI Gene 4968] {aka HMMH, HOGG1, MUTM, OGH1}, IGF2 (insulin like growth factor 2) [NCBI Gene 3481] {aka C11orf43, GRDF, IGF-II, PP9974, SRS3}, MTRR (5-methyltetrahydrofolate-homocysteine methyltransferase reductase) [NCBI Gene 4552] {aka MSR, cblE}, NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}, GSTT1 (glutathione S-transferase theta 1) [NCBI Gene 2952], GCH1 (GTP cyclohydrolase 1) [NCBI Gene 2643] {aka DYT14, DYT5, DYT5a, GCH, GTP-CH-1, GTPCH1}, TNP1 (transition protein 1) [NCBI Gene 7141] {aka TP1}, SOD2 (superoxide dismutase 2) [NCBI Gene 6648] {aka GC1, GClnc1, IPO-B, IPOB, MNSOD, MVCD6}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, GSR (glutathione-disulfide reductase) [NCBI Gene 2936] {aka CNSHA10, GR, GSRD, HEL-75, HEL-S-122m}, NOS1 (nitric oxide synthase 1) [NCBI Gene 4842] {aka IHPS1, N-NOS, NC-NOS, NOS, bNOS, nNOS}, SOD3 (superoxide dismutase 3) [NCBI Gene 6649] {aka EC-SOD}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, H19 (H19 imprinted maternally expressed transcript) [NCBI Gene 283120] {aka ASM, ASM1, BWS, D11S813E, GMRSP, LINC00008}, PRM2 (protamine 2) [NCBI Gene 5620] {aka CT94.2}, NAP1L4 (nucleosome assembly protein 1 like 4) [NCBI Gene 4676] {aka NAP1L4b, NAP2, NAP2L, hNAP2}, DNTT (DNA nucleotidylexotransferase) [NCBI Gene 1791] {aka TDT}, CHD5 (chromodomain helicase DNA binding protein 5) [NCBI Gene 26038] {aka CHD-5, PMNDS}, GPX4 (glutathione peroxidase 4) [NCBI Gene 2879] {aka GPx-4, GSHPx-4, MCSP, PHGPx, SMDS, snGPx}, MEST (mesoderm specific transcript) [NCBI Gene 4232] {aka PEG1}, GSTK1 (glutathione S-transferase kappa 1) [NCBI Gene 373156] {aka GST, GST 13-13, GST13, GST13-13, GSTK1-1, hGSTK1}, NOS3 (nitric oxide synthase 3) [NCBI Gene 4846] {aka EC-NOS, ECNOS, MYMY8, NOSIII, cNOS, eNOS}, KCNQ1OT1 (KCNQ1 opposite strand/antisense transcript 1) [NCBI Gene 10984] {aka KCNQ1-AS2, KCNQ10T1, Kncq1, KvDMR1, KvLQT1-AS, LIT1}, LEP (leptin) [NCBI Gene 3952] {aka LEPD, OB, OBS}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, TNP2 (transition protein 2) [NCBI Gene 7142] {aka TP2}, MIR34C (microRNA 34c) [NCBI Gene 407042] {aka MIRN34C, miRNA34C, mir-34c}, AIFM1 (apoptosis inducing factor mitochondria associated 1) [NCBI Gene 9131] {aka AIF, AUNX1, CMT2D, CMTX4, COWCK, COXPD6}, POLB (DNA polymerase beta) [NCBI Gene 5423], GPX1 (glutathione peroxidase 1) [NCBI Gene 2876] {aka GPXD, GSHPX1}, GSTM1 (glutathione S-transferase mu 1) [NCBI Gene 2944] {aka GST1, GSTM1-1, GSTM1a-1a, GSTM1b-1b, GTH4, GTM1}, ENDOG (endonuclease G) [NCBI Gene 2021], BRDT (bromodomain testis associated) [NCBI Gene 676] {aka BRD6, CT9, SPGF21}, MOK (MOK protein kinase) [NCBI Gene 5891] {aka RAGE, RAGE-1, RAGE1, STK30}, GSTP1 (glutathione S-transferase pi 1) [NCBI Gene 2950] {aka DFN7, FAEES3, GST3, GSTP, GSTP1-1, HEL-S-22}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, XRCC1 (X-ray repair cross complementing 1) [NCBI Gene 7515] {aka RCC, SCAR26}, PRDX6 (peroxiredoxin 6) [NCBI Gene 9588] {aka 1-Cys, AOP2, HEL-S-128m, LPCAT-5, NSGPx, PRX}, TXN (thioredoxin) [NCBI Gene 7295] {aka TRDX, TRX, TRX1, TXN1, Trx80}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, MIR122 (microRNA 122) [NCBI Gene 406906] {aka MIR122A, MIRN122, MIRN122A, hsa-mir-122, miRNA122, miRNA122A}, DNAH8 (dynein axonemal heavy chain 8) [NCBI Gene 1769] {aka ATPase, SPGF46, hdhc9}, CAT (catalase) [NCBI Gene 847], ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}
- **Diseases:** organ failure (MESH:D009102), Obesity (MESH:D009765), hypoxia (MESH:D000860), varicocele (MESH:D014646), fever (MESH:D005334), Male Infertility (MESH:D007248), OS (MESH:C567932), metabolic dysregulation (MESH:D021081), metabolic disorders (MESH:D008659), Mitochondrial dysfunction (MESH:D028361), autism spectrum disorder (MESH:D000067877), Remodeling Defects (MESH:D064752), testicular injury (MESH:D013733), unexplained (MESH:D013001), Hyperglycemia (MESH:D006943), neurodevelopmental or metabolic disorders (MESH:D024821), Oxidative Damage (MESH:D004194), injury to (MESH:D014947), inflammation (MESH:D007249), arrest (MESH:D006323), Leukocytic (MESH:D007960), diabetes (MESH:D003920), Dysbiosis (MESH:D064806), Silver-Russell syndrome (MESH:D056730), cancer (MESH:D009369), embryonic developmental failure (MESH:D051437), behavioral abnormalities (MESH:D001523), miscarriage (MESH:D000022), congenital or developmental anomalies (MESH:C566440), adiposity (MESH:D018205), oligozoospermia (MESH:D009845), implantation (MESH:D057873), SDF (MESH:D012892), stillbirth (MESH:D050497), systems disorder (MESH:D009422), aneuploidy (MESH:D000782), Chromatin Instability (MESH:D043171), neurodevelopmental disorders (MESH:D002658), idiopathic azoospermia (MESH:D053713), Protamine Deficiency (MESH:D007153), Beckwith-Wiedemann syndrome (MESH:D001506), OS (MESH:D000079225), endotoxemia (MESH:D019446), birth defects (MESH:D000014), health (OMIM:603663), cytotoxic (MESH:D064420), embryonic arrest (MESH:D018236), idiopathic infertility (MESH:D007246), infection (MESH:D007239)
- **Chemicals:** S-adenosylmethionine (MESH:D012436), nitrotyrosine (MESH:C002744), iron (MESH:D007501), 5-methylcytosine (MESH:D044503), E (MESH:D004540), cytosine (MESH:D003596), Phospholipid (MESH:D010743), CMA3 (MESH:D014128), water (MESH:D014867), AGEs (MESH:D017127), hydroxyl (MESH:D017665), 8-Hydroxy-2'-deoxyguanosine (MESH:D000080242), NO (MESH:D009569), copper (MESH:D003300), adenine (MESH:D000225), Vitamins C (MESH:D001205), 4-HNE (MESH:C027576), isoprostanes (MESH:D028421), zinc (MESH:D015032), sugar (MESH:D000073893), phosphate (MESH:D010710), metal (MESH:D008670), acridine (MESH:D000166), lipid hydroperoxides (MESH:D008054), guanine (MESH:D006147), CoQ10 (MESH:C024989), pentose phosphate (MESH:D010428), hypochlorous acid (MESH:D006997), urate (MESH:D014527), vitamin E (MESH:D014810), alpha-tocopherol (MESH:D024502), cysteine (MESH:D003545), Lipid (MESH:D008055), GSH (MESH:D005978), peroxynitrite (MESH:D030421), taurine (MESH:D013654), AB (MESH:C017006), ATP (MESH:D000255), heavy metals (MESH:D019216), ROS (MESH:D017382), folate (MESH:D005492), glucose (MESH:D005947), tempol (MESH:C001803), Alcohol (MESH:D000438), N-Acetylcysteine (MESH:D000111), cadmium (MESH:D002104), acetaldehyde (MESH:D000079), phthalates (MESH:C032279), L-carnitine (MESH:D002331), disulfide (MESH:D004220), 5-hmC (MESH:C011865), polyunsaturated fatty acids (MESH:D005231), melatonin (MESH:D008550), Cigarette smoke (-), superoxide (MESH:D013481), ozone (MESH:D010126), Hydrogen peroxide (MESH:D006861), nicotine (MESH:D009538), selenium (MESH:D012643), malondialdehyde (MESH:D008315)
- **Species:** Nicotiana tabacum (American tobacco, species) [taxon 4097], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** Val/Val, Ser/Ser, -954G>C, Ile105Val, rs4880, Cys/Cys, Glu298Asp, 326Cys, G-to-T, -262C>T, rs1050450, Ala/Ala, C150T

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12941985/full.md

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Source: https://tomesphere.com/paper/PMC12941985