# Explorative Insights into Local Immune Response to BK Virus—A Cross-Sectional Study in Urine Samples Between Transplant Recipients and Non-Immunocompromised Hosts

**Authors:** Agata Michnowska, Bartosz Wojciuk, Paulina Reus, Agata Filipowska, Magdalena Mnichowska-Polanowska, Bartłomiej Grygorcewicz, Kazimierz Ciechanowski, Karolina Kędzierska-Kapuza

PMC · DOI: 10.3390/medicina62020240 · 2026-01-23

## TL;DR

This study explores how BK virus affects the immune response in kidney transplant recipients by analyzing urine samples and comparing them to non-immunocompromised individuals.

## Contribution

The study identifies specific immune proteins in urine that distinguish BKPyV-positive transplant recipients from healthy individuals.

## Key findings

- BKPyV-positive transplant recipients had a more distinct urinary proteome compared to healthy controls.
- KLRD1 (CD94) was uniquely upregulated in all transplant recipients but downregulated in BKPyV-positive samples.
- 17 out of 33 detected proteins showed significant differences between groups.

## Abstract

Background and Objectives: BK virus (BKPyV) is a common latent pathogen in humans, but it becomes particularly insidious in kidney transplant recipients, where reactivation may contribute to allograft loss. The immune mechanisms controlling BKPyV latency in immunocompromised hosts remain incompletely understood. We assume the urinary immune proteome reflects local immune response in the kidney and the urinary tract. Thus, this study aimed to determine whether the presence of BKPyV alters the urinary immune-related proteomic profile of kidney transplant recipients and shifts it away to that observed in healthy individuals. Materials and Methods: 137 urine samples were collected from kidney recipients, both BKPyV-positive and BKPyV-negative, patients with stage 5 chronic kidney disease, and healthy controls. Targeted proteomic analysis was performed using the proximity extension assay, followed by heatmapping, principal component analysis, random forest, and linear regression modeling. Results: The urinary proteome of BKPyV-positive recipients remained more distinct from healthy controls than that of BKPyV-negative ones. Among the 33 proteins detected across all samples, 17 showed significant intergroup differences, with KLRD1 (CD94) uniquely upregulated in all transplant recipients, but downregulated in BKPyV-positive samples. Conclusions: We conclude that the presence of BKPyV in the urinary tract of kidney recipients notably interplays with the local immune response even in the absence of clinical disease.

## Linked entities

- **Proteins:** KLRD1 (killer cell lectin like receptor D1), KLRD1 (killer cell lectin like receptor D1)
- **Diseases:** chronic kidney disease (MONDO:0005300)

## Full-text entities

- **Genes:** KRT19 (keratin 19) [NCBI Gene 3880] {aka CK19, K19, K1CS}, CXCL16 (C-X-C motif chemokine ligand 16) [NCBI Gene 58191] {aka CXCLG16, SR-PSOX, SRPSOX}, CLEC7A (C-type lectin domain containing 7A) [NCBI Gene 64581] {aka BGR, CANDF4, CD369, CLECSF12, DECTIN1, SCARE2}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}, CBX8 (chromobox 8) [NCBI Gene 57332] {aka PC3, RC1}, BTN3A2 (butyrophilin subfamily 3 member A2) [NCBI Gene 11118] {aka BT3.2, BTF4, BTN3.2, CD277}, KLRC2 (killer cell lectin like receptor C2) [NCBI Gene 3822] {aka CD159c, NKG2-C, NKG2C}, ITGB6 (integrin subunit beta 6) [NCBI Gene 3694] {aka AI1H}, EDAR (ectodysplasin A receptor) [NCBI Gene 10913] {aka DL, ECTD10A, ECTD10B, ED1R, ED3, ED5}, CCL11 (C-C motif chemokine ligand 11) [NCBI Gene 6356] {aka SCYA11}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, HLA-E (major histocompatibility complex, class I, E) [NCBI Gene 3133] {aka HLA-6.2, QA1}, PTH1R (parathyroid hormone 1 receptor) [NCBI Gene 5745] {aka EKNS, PFE, PTHR, PTHR1}, FAM3B (FAM3 metabolism regulating signaling molecule B) [NCBI Gene 54097] {aka 2-21, C21orf11, C21orf76, ORF9, PANDER, PRED44}, CD83 (CD83 molecule) [NCBI Gene 9308] {aka BL11, HB15}, KLRC1 (killer cell lectin like receptor C1) [NCBI Gene 3821] {aka CD159A, NKG2, NKG2A}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, PRDX1 (peroxiredoxin 1) [NCBI Gene 5052] {aka MSP23, NKEF-A, NKEFA, PAG, PAGA, PAGB}, DFFA (DNA fragmentation factor subunit alpha) [NCBI Gene 1676] {aka DFF-45, DFF1, ICAD}, PTH (parathyroid hormone) [NCBI Gene 5741] {aka FIH1, PTH1}, CXADR (CXADR cell adhesion molecule) [NCBI Gene 1525] {aka CAR, CAR4/6, HCAR}, HEXIM1 (HEXIM P-TEFb complex subunit 1) [NCBI Gene 10614] {aka EDG1, HIS1, MAQ1}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, KLRD1 (killer cell lectin like receptor D1) [NCBI Gene 3824] {aka CD94}, CLEC4A (C-type lectin domain family 4 member A) [NCBI Gene 50856] {aka CD367, CLECSF6, DCIR, DDB27, HDCGC13P, LLIR}, PADI2 (peptidyl arginine deiminase 2) [NCBI Gene 11240] {aka PAD-H19, PAD2, PDI2}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, HNMT (histamine N-methyltransferase) [NCBI Gene 3176] {aka HMT, HNMT-S1, HNMT-S2, MRT51}, DCBLD2 (discoidin, CUB and LCCL domain containing 2) [NCBI Gene 131566] {aka CLCP1, ESDN}, CXCR6 (C-X-C motif chemokine receptor 6) [NCBI Gene 10663] {aka BONZO, CD186, CDw186, STRL33, TYMSTR}, RAPGEF5 (Rap guanine nucleotide exchange factor 5) [NCBI Gene 9771] {aka GFR, MR-GEF, MRGEF, REPAC}, AREG (amphiregulin) [NCBI Gene 374] {aka AR, AREGB, CRDGF, SDGF}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, STC1 (stanniocalcin 1) [NCBI Gene 6781] {aka STC}, LAMP3 (lysosome associated membrane protein 3) [NCBI Gene 27074] {aka CD208, DC LAMP, DC-LAMP, DCLAMP, LAMP, LAMP-3}, LILRB4 (leukocyte immunoglobulin like receptor B4) [NCBI Gene 11006] {aka B4, CD85K, ILT-3, ILT3, LIR-5, LIR5}, CDSN (corneodesmosin) [NCBI Gene 1041] {aka HTSS, HTSS1, HYPT2, PSS, PSS1}
- **Diseases:** ureteric stenosis (MESH:D014515), graft dysfunction (MESH:D055031), CKD (MESH:D051436), HC (MESH:D000067329), pancreatic cancer (MESH:D010190), injury to (MESH:D014947), transplant disease (MESH:D004194), inflammation (MESH:D007249), enterovirus infections (MESH:D004769), BK virus-associated nephropathy (MESH:D016263), hemorrhagic cystitis (MESH:D006470), polyomavirus infection (MESH:D027601), BK infection (MESH:D007239), viral infections (MESH:D014777), type 1 diabetes (MESH:D003922)
- **Chemicals:** BK (MESH:D001603), phosphate (MESH:D010710), tacrolimus (MESH:D016559), BKPy (-), calcium (MESH:D002118)
- **Species:** Enterovirus (genus) [taxon 12059], Kayvirus kay (species) [taxon 221915], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Polyomavirus sp. (species) [taxon 36362], Betapolyomavirus hominis (species) [taxon 1891762]

## Figures

13 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12941888/full.md

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Source: https://tomesphere.com/paper/PMC12941888