# An Ammonium Transporter Gene Contributes to the Aggressiveness of the Dutch Elm Disease Pathogen Ophiostoma novo-ulmi

**Authors:** Louis Bernier, Thais C. de Oliveira, Josée-Anne Majeau, Karine V. Plourde, Volker Jacobi, Philippe Tanguay, Paul Y. de la Bastide, Will E. Hintz, Ilga M. Porth, Josée Dufour, Pauline Hessenauer, Christine A. Roden, Cloé Laflamme, Lucie Varlet

PMC · DOI: 10.3390/jof12020137 · 2026-02-13

## TL;DR

A gene encoding an ammonium transporter in a fungus that causes Dutch elm disease is found to be important for its ability to aggressively infect elm trees.

## Contribution

The study identifies and characterizes an ammonium transporter gene (amtA) as a key factor in the aggressiveness of the Dutch elm disease pathogen Ophiostoma novo-ulmi.

## Key findings

- A knockdown mutant of the amtA gene showed significantly reduced aggressiveness in infecting elm saplings.
- The amtA gene product has features similar to Mep2-type transporters, including conserved amino acid residues and transmembrane helices.
- CRISPR-Cas9 knockout mutants of amtA retained some wild-type traits but were less aggressive towards elm trees.

## Abstract

Molecular mechanisms determining pathogenicity of the Dutch elm disease fungus Ophiostoma novo-ulmi are poorly understood. Prior identification of the pathogenicity locus pat1 prompted a chromosome walking approach to elucidate gene function in this region. Among 17 identified genes, ONUg0282 (amtA) was predicted to encode a high-affinity ammonium transporter. In silico analyses confirmed the presence of four additional amt genes (amtB, amtC, amtD, and amtE) in both O. novo-ulmi and the less aggressive O. ulmi and that amtA and amtB belong to the Saccharomyces cerevisiae mep2 clade. The predicted amtA gene product showed features of Mep2-type transceptors, including amino acid residues corresponding to His-168 and His-318 in Escherichia coli AmtB protein, 11 transmembrane helices, and a conserved 22 amino acid motif immediately downstream of the last transmembrane helix. A knockdown amtA mutant with 25% residual expression was significantly less aggressive than wild-type O. novo-ulmi strain H327 when infecting Ulmus americana × U. parvifolia saplings. Predicted AmtA transporters from two CRISPR-Cas9 knockout mutants contained only five intact transmembrane helices. The ΔamtA mutants retained several wild-type phenotypic traits, including yeast–mycelium dimorphism, but were significantly less aggressive than H327 towards U. americana saplings. We concluded that ONUg0282 is an important determinant of aggressiveness in O. novo-ulmi.

## Linked entities

- **Genes:** amtA (ammonium transporter) [NCBI Gene 8621061], amtB (ammonium transporter) [NCBI Gene 879509], amtC (ammonium transporter) [NCBI Gene 8616194]
- **Proteins:** amtA (ammonium transporter), MEP2 (ammonium permease MEP2), amtB (ammonium transporter)
- **Species:** Ophiostoma novo-ulmi (taxon 42373), Ulmus americana (taxon 29740), Escherichia coli (taxon 562), Saccharomyces cerevisiae (taxon 4932)

## Full-text entities

- **Genes:** ACT1 (actin) [NCBI Gene 850504] {aka ABY1, END7}, MEP1 (ammonium permease MEP1) [NCBI Gene 853019] {aka AMT1}, PAT1 (deadenylation-dependent mRNA-decapping factor PAT1) [NCBI Gene 850440] {aka MRT1}, MEP3 (ammonium permease MEP3) [NCBI Gene 856260], MEP2 (ammonium permease MEP2) [NCBI Gene 855580]
- **Diseases:** Fusarium (MESH:D060585), necroses (MESH:D010020), infection (MESH:D007239), Elm Disease (MESH:D004194), injury to (MESH:D014947), O. (MESH:C535508), fungal (MESH:D009181), Aggressiveness (MESH:D010554), DED (MESH:D054078), necrotic lesions (MESH:D009059)
- **Chemicals:** arginine (MESH:D001120), streptomycin sulfate (MESH:D013307), methylammonium (MESH:C027451), AMtB (MESH:C080838), Carbon (MESH:D002244), agar (MESH:D000362), hygromycin (MESH:C026273), N (MESH:D009584), amino acids (MESH:D000596), EDTA (MESH:D004492), Ammonium (MESH:D064751), Lipofectamine (MESH:C086724), glycerol (MESH:D005990), inorganic phosphate (MESH:D010710), Pi (MESH:D010716), acids (MESH:D000143), NaCl (MESH:D012965), maltose (MESH:D008320), L-proline (MESH:D011392), linoleic acid (MESH:D019787), AmtA (-), MgCl2 (MESH:D015636), galactose (MESH:D005690), cAMP (MESH:D000242), chloramphenicol (MESH:D002701), cycloheximide (MESH:D003513), adenine (MESH:D000225), agarose (MESH:D012685), ammonium sulfate (MESH:D000645), tungsten (MESH:D014414), sucrose (MESH:D013395), cysteine (MESH:D003545), Water (MESH:D014867)
- **Species:** Homo sapiens (human, species) [taxon 9606], Aspergillus oryzae (species) [taxon 5062], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Fusarium graminearum (species) [taxon 5518], Colletotrichum gloeosporioides (species) [taxon 474922], Microbotryum violaceum (species) [taxon 5272], Geosiphon pyriformis (species) [taxon 50956], Hebeloma cylindrosporum (species) [taxon 76867], Foot-and-mouth disease virus O (no rank) [taxon 12118], Sc [taxon 544725], Sporothrix schenckii (species) [taxon 29908], Malus domestica (apple, species) [taxon 3750], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Aspergillus flavus (species) [taxon 5059], Orthognathotermes sp. n. (species) [taxon 2910512], Ophiostoma novo-ulmi subsp. americana (subspecies) [taxon 170178], Escherichia coli (E. coli, species) [taxon 562], Candida albicans (species) [taxon 5476], Ulmus pumila (dwarf elm, species) [taxon 198266], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], Blastomyces dermatitidis (species) [taxon 5039], Ulmus americana (American elm, species) [taxon 29740], Talaromyces purpureogenus (species) [taxon 1266744], Ulmus parvifolia (Chinese elm, species) [taxon 63058], Histoplasma capsulatum (species) [taxon 5037], Ophiostoma novo-ulmi (Dutch elm disease fungus, species) [taxon 42373], Cryptococcus neoformans (Cryptococcus neoformans serotype A, species) [taxon 5207], Zymoseptoria tritici (species) [taxon 1047171], Fusarium fujikuroi (species) [taxon 5127], Ophiostoma ulmi (Dutch elm disease fungus, species) [taxon 5174], Arthrobacter sp. ST (species) [taxon 2782049], Staphylococcus sp. S (species) [taxon 573870], Mucor circinelloides (species) [taxon 36080], Mycosarcoma maydis (corn smut, species) [taxon 5270], Ophiostoma novo-ulmi subsp. novo-ulmi (subspecies) [taxon 170179]
- **Mutations:** Q412T, Y-to-M
- **Cell lines:** OSCAR — Homo sapiens (Human), Embryonic stem cell (CVCL_B020), H327 — Homo sapiens (Human), Finite cell line (CVCL_V765), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), /8 — Xenopus laevis (African clawed frog), Spontaneously immortalized cell line (CVCL_4564), ONUg0282 — Homo sapiens (Human), Transformed cell line (CVCL_8V79)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12941551/full.md

---
Source: https://tomesphere.com/paper/PMC12941551