# Deep Biological Clocks in Critical Care Medicine: A Scoping Review Toward Translational Precision Care

**Authors:** Ithamar Cheyne, Magdalena Voinič, Tara Radaideh, Abdullah Daher, Julia Niezgoda, Maja Anna Romanowska, Małgorzata Mikaszewska-Sokolewicz

PMC · DOI: 10.3390/jpm16020092 · 2026-02-04

## TL;DR

This paper reviews how biological aging clocks could improve personalized care in intensive care units by predicting patient outcomes more accurately than traditional methods.

## Contribution

The study is the first scoping review to systematically evaluate biological aging biomarkers in ICU settings, highlighting their potential for precision medicine.

## Key findings

- Accelerated biological aging is consistently linked to higher mortality and organ dysfunction in ICU patients.
- Inflammation-weighted and stress-responsive biological clocks show clinically meaningful associations with critical illness outcomes.
- Despite methodological differences, a convergent signal supports the use of these biomarkers for personalized prognostication.

## Abstract

Background: Outcomes after critical illness vary markedly despite similar diagnoses and severity scores, underscoring the limitations of chronological age and conventional Intensive Care Unit (ICU) prognostic tools. Personalization of critical care is increasingly essential to improve not only short-term survival but also long-term post-discharge outcomes. Biological aging clocks provide a quantitative framework to capture physiological reserve, immune competence, and vulnerability to stress. Methods: We conducted a scoping review of original human studies published between January 2015 and October 2025 that evaluated biological aging biomarkers in adult ICU populations. PubMed/MEDLINE, Scopus, Web of Science, and Embase were searched, with backward citation screening. Results: Across epigenetic, telomere-based, cfDNA, proteomic, metabolomic, and phenotypic aging measures, accelerated biological aging was consistently associated with increased mortality, organ dysfunction, and post-ICU vulnerability. Despite substantial methodological heterogeneity, a convergent signal emerged linking inflammation-weighted and stress-responsive deep biological clocks to clinically meaningful outcomes in critically ill patients. Conclusions: Biological aging biomarkers represent a mechanistically grounded approach to personalized prognostication in critical care. From a translational perspective, deep biological clocks hold promise for personalized risk stratification, prognostication, and the identification of high-risk recovery phenotypes, although prospective validation and implementation studies are required.

## Full-text entities

- **Genes:** FBXO6 (F-box protein 6) [NCBI Gene 26270] {aka FBG2, FBS2, FBX6, Fbx6b}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, HIC1 (HIC ZBTB transcriptional repressor 1) [NCBI Gene 3090] {aka ZBTB29, ZNF901, hic-1}, MIR124-1HG (MIR124-1 host gene) [NCBI Gene 157627] {aka LINC00599, Rncr3, neuroLNC}, MYD88 (MYD88 innate immune signal transduction adaptor) [NCBI Gene 4615] {aka IMD68, MYD88D, WM1}, HMGB1 (high mobility group box 1) [NCBI Gene 3146] {aka HMG-1, HMG1, HMG3, SBP-1}, DDX17 (DEAD-box helicase 17) [NCBI Gene 10521] {aka P72, RH70}, TAGLN2 (transgelin 2) [NCBI Gene 8407] {aka HA1756}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, MAP3K14 (mitogen-activated protein kinase kinase kinase 14) [NCBI Gene 9020] {aka FTDCR1B, HS, HSNIK, IMD112, NIK}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, MIF (macrophage migration inhibitory factor) [NCBI Gene 4282] {aka GIF, GLIF, MMIF}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, TNFRSF1A (TNF receptor superfamily member 1A) [NCBI Gene 7132] {aka CD120a, FPF, TBP1, TNF-R, TNF-R-I, TNF-R55}, PHF20 (PHD finger protein 20) [NCBI Gene 51230] {aka C20orf104, GLEA2, HCA58, NZF, TDRD20A, TZP}, NAMPT (nicotinamide phosphoribosyltransferase) [NCBI Gene 10135] {aka 1110035O14Rik, PBEF, PBEF1, VF, VISFATIN}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, SPI1 (Spi-1 proto-oncogene) [NCBI Gene 6688] {aka AGM10, OF, PU.1, SFPI1, SPI-1, SPI-A}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, TIMP1 (TIMP metallopeptidase inhibitor 1) [NCBI Gene 7076] {aka CLGI, EPA, EPO, HCI, TIMP, TIMP-1}, FARP1 (FERM, ARH/RhoGEF and pleckstrin domain protein 1) [NCBI Gene 10160] {aka CDEP, FARP1-IT1, GLCC1, PLEKHC2, PPP1R75}, GATAD2A (GATA zinc finger domain containing 2A) [NCBI Gene 54815] {aka p66alpha}, CREBBP (CREB binding lysine acetyltransferase) [NCBI Gene 1387] {aka CBP, KAT3A, MKHK1, RSTS, RSTS1}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, SERPINA1 (serpin family A member 1) [NCBI Gene 5265] {aka A1A, A1AT, AAT, PI, PI1, PRO2275}, BID (BH3 interacting domain death agonist) [NCBI Gene 637] {aka FP497}, SLX4 (SLX4 structure-specific endonuclease subunit) [NCBI Gene 84464] {aka BTBD12, FANCP, MUS312}, MPO (myeloperoxidase) [NCBI Gene 4353], S1PR3 (sphingosine-1-phosphate receptor 3) [NCBI Gene 1903] {aka C9orf108, C9orf47, EDG-3, EDG3, LPB3, S1P3}, VCAM1 (vascular cell adhesion molecule 1) [NCBI Gene 7412] {aka CD106, INCAM-100}, AQP5 (aquaporin 5) [NCBI Gene 362] {aka AQP-5, PPKB}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, GFAP (glial fibrillary acidic protein) [NCBI Gene 2670] {aka ALXDRD}, JAK1 (Janus kinase 1) [NCBI Gene 3716] {aka AIIDE, JAK1A, JAK1B, JTK3}, MBTPS1 (membrane bound transcription factor peptidase, site 1) [NCBI Gene 8720] {aka CAOP, PCSK8, S1P, SEDKF, SKI-1}, LMNA (lamin A/C) [NCBI Gene 4000] {aka CDCD1, CDDC, CMD1A, CMT2B1, EMD2, FPL}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, PTPRN2 (protein tyrosine phosphatase receptor type N2) [NCBI Gene 5799] {aka IA-2beta, IAR, ICAAR, PTPRP, R-PTP-N2}, ANGPT2 (angiopoietin 2) [NCBI Gene 285] {aka AGPT2, ANG2, LMPHM10}, MANEA (mannosidase endo-alpha) [NCBI Gene 79694] {aka ENDO, hEndo}, IL27 (interleukin 27) [NCBI Gene 246778] {aka IL-27, IL-27A, IL27A, IL27p28, IL30, p28}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, LDHB (lactate dehydrogenase B) [NCBI Gene 3945] {aka HEL-S-281, LDH-B, LDH-H, LDHBD, TRG-5}, TREM1 (triggering receptor expressed on myeloid cells 1) [NCBI Gene 54210] {aka CD354, TREM-1}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, AZU1 (azurocidin 1) [NCBI Gene 566] {aka AZAMP, AZU, CAP37, HBP, HUMAZUR, NAZC}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, HDAC1 (histone deacetylase 1) [NCBI Gene 3065] {aka GON-10, HD1, KDAC1, RPD3, RPD3L1}, NADK2 (NAD kinase 2, mitochondrial) [NCBI Gene 133686] {aka C5orf33, DECRD, MNADK, NADKD1}, CCL20 (C-C motif chemokine ligand 20) [NCBI Gene 6364] {aka CKb4, Exodus, LARC, MIP-3-alpha, MIP-3a, MIP3A}, TYK2 (tyrosine kinase 2) [NCBI Gene 7297] {aka IMD35, JTK1}, MAP3K1 (mitogen-activated protein kinase kinase kinase 1) [NCBI Gene 4214] {aka MAPKKK1, MEKK, MEKK 1, MEKK1, SRXY6}, TAB2 (TGF-beta activated kinase 1 (MAP3K7) binding protein 2) [NCBI Gene 23118] {aka CHTD2, MAP3K7IP2, TAB-2}, IL1R1 (interleukin 1 receptor type 1) [NCBI Gene 3554] {aka CD121A, CRMO3, D2S1473, IL-1R-alpha, IL-1RT1, IL1R}, TRADD (TNFRSF1A associated via death domain) [NCBI Gene 8717] {aka Hs.89862}, MAP3K7 (mitogen-activated protein kinase kinase kinase 7) [NCBI Gene 6885] {aka CSCF, FMD2, MEKK7, TAK1, TGF1a}, LBP (lipopolysaccharide binding protein) [NCBI Gene 3929] {aka BPIFD2}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, TNFAIP8 (TNF alpha induced protein 8) [NCBI Gene 25816] {aka GG2-1, MDC-3.13, NDED, SCC-S2, SCCS2}
- **Diseases:** renal dysfunction (MESH:D007674), LANGUAGE,"English (MESH:D018614), myocardial dysfunction (MESH:D006331), TL (MESH:C536801), Septic (MESH:D001170), HIV infection (MESH:D015658), immune dysregulation (OMIM:614878), septic shock (MESH:D012772), Sepsis (MESH:D018805), Chronic Diseases (MESH:D002908), tissue injury (MESH:D017695), programmed cell (MESH:D002292), axonal damage (MESH:D001480), thrombotic (MESH:D013927), care (MESH:D003428), Viral infections (MESH:D014777), Aneurysmal Subarachnoid Hemorrhage (MESH:D013345), brain injury (MESH:D001930), death (MESH:D003643), immunologic function (MESH:D007153), COVID-19 (MESH:D000086382), immune dysfunction (MESH:D007154), end-stage renal failure (MESH:D007676), Myocardial Infarction (MESH:D009203), infection (MESH:D007239), cardiovascular disease (MESH:D002318), MA (MESH:D019588), endothelial injury (MESH:D057772), MODS (MESH:D009102), STEMI (MESH:D000072657), obese (MESH:D009765), impaired metabolic, respiratory (MESH:D012131), tSAH (MESH:D020206), SI-AKI (MESH:D058186), stroke (MESH:D020521), immune-mediated disease (MESH:C567355), COPD (MESH:D029424), SCM (MESH:D009202), functional (MESH:D003291), ARDS (MESH:D012128), Psoriasis (MESH:D011565), Metabolic dysregulation (MESH:D021081), metabolic (MESH:D008659), Burn Injury (MESH:D002056), vasospasm (MESH:D020301), Frailty (MESH:D000073496), cirrhosis (MESH:D005355), Critical Illness (MESH:D016638), axonal lesions (MESH:D004194), Intracranial Injury (MESH:D014947), Inflammatory (MESH:D007249), -obstructive coronary arteries (MESH:D000088442), acute coronary syndromes (MESH:D054058), mitochondrial (MESH:D028361), coronary or cerebrovascular disease (MESH:D003327), influenza (MESH:D007251), coronary rupture (MESH:D012421), diabetes mellitus (MESH:D003920), DCI (MESH:D002545), endothelial dysfunction (MESH:D014652)
- **Chemicals:** lipid (MESH:D008055), sphingolipid (MESH:D013107), LPC (MESH:D008244), calcium (MESH:D002118), Extracorporeal (-), 5-hmC (MESH:C011865), NADP (MESH:D009249), CpG (MESH:C015772), phosphatidylinositol (3,4,5)-trisphosphate (MESH:C060974), sphingosine-1-phosphate (MESH:C060506), LysoPC (MESH:C006065), cholesterol (MESH:D002784), lactate (MESH:D019344)
- **Species:** Homo sapiens (human, species) [taxon 9606], Human immunodeficiency virus 1 (no rank) [taxon 11676]

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12941452/full.md

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Source: https://tomesphere.com/paper/PMC12941452