# Next-Generation Sequencing-Based Detection of KRAS G12D Variants in Colorectal Cancer: A Retrospective Cohort Study

**Authors:** Gulam Hekimoglu, Metin Eser, Murat Hakki Yarar, Fatma Gulcicek Ayranci, Melike Ozcelik

PMC · DOI: 10.3390/genes17020174 · Genes · 2026-01-31

## TL;DR

This study used next-generation sequencing to detect KRAS G12D mutations in colorectal cancer patients, showing their potential for targeted therapy.

## Contribution

The study identifies KRAS G12D variant prevalence and its potential for targeted treatment in colorectal cancer patients.

## Key findings

- KRAS variants were detected in 41% of 73 colorectal cancer patients.
- KRAS G12D variants showed potential responsiveness to targeted therapy.
- ERBB2 amplification was found in one patient and associated with resistance to anti-EGFR therapy.

## Abstract

Purpose: Colorectal cancer (CRC) is a highly aggressive malignancy of the digestive system. Somatic variants in the Kirsten rat sarcoma virus oncogene homolog (KRAS) gene have a significant influence on CRC progression and serve as key predictors of resistance to anti-epidermal growth factor receptor (EGFR) therapy. This study aimed to determine the prevalence of KRAS variants, with a particular focus on G12D variants, which represent potential for targeted therapy. Methods: A cohort of 73 CRC patients was evaluated between January 2021 and August 2024. Next-generation sequencing (NGS) was performed using the Archer® VariantPlex® Solid Tumor Focus v2 (Integrated DNA Technologies, Inc., Boulder, CO, USA) assay on the Illumina NextSeq platform. The gene panel included 20 genes frequently mutated in solid tumors, assessing point variants, insertions/deletions, and microsatellite instability. Results: The cohort of the study comprised 38 female (52%) and 35 males (48%) patients aged 31–83 years (mean, 58.77 ± 12.72). No significant difference in mean age was observed between males and females (60.31 ± 12.32 vs. 57.34 ± 13.08; p > 0.05). KRAS variants were detected in 30 patients (41%). Among these, the variant frequencies for G12D, G12V, and G13D were 7%, 11%, and 11%, respectively. Additionally, one patient (1.4%) harbored an ERBB2 amplification. All KRAS variants were associated with resistance to anti-EGFR therapy. Notably, KRAS G12D variants have potential responsiveness to targeted therapy, while human epidermal growth factor receptor 2 (ERBB2) amplifications are responsive to anti-HER2 treatments and resistant to anti-EGFR therapies. Conclusions: These findings highlight the clinical significance of KRAS variant profiling for prognosis and personalized treatment planning in CRC. Moreover, assessing KRAS variants individually is crucial to better understanding treatment response and exploring the potential targeted therapy in CRC management.

## Linked entities

- **Genes:** KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845], ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064]
- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** HRAS (HRas proto-oncogene, GTPase) [NCBI Gene 3265] {aka C-BAS/HAS, C-H-RAS, C-HA-RAS1, CTLO, H-RASIDX, HAMSV}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, RET (ret proto-oncogene) [NCBI Gene 5979] {aka CDHF12, CDHR16, HSCR1, MEN2A, MEN2B, MTC1}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, NRAS (NRAS proto-oncogene, GTPase) [NCBI Gene 4893] {aka ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, FOXL2 (forkhead box L2) [NCBI Gene 668] {aka BPES, BPES1, PFRK, PINTO, POF3}, GNAS (GNAS complex locus) [NCBI Gene 2778] {aka AHO, AIMAH1, C20orf45, GNAS1, GPSA, GSA}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193] {aka ACTFS, HDMX, LSKB, hdm2}, PDGFRA (platelet derived growth factor receptor alpha) [NCBI Gene 5156] {aka CD140A, PDGFR-2, PDGFR2}, IDH2 (isocitrate dehydrogenase (NADP(+)) 2) [NCBI Gene 3418] {aka D2HGA2, ICD-M, IDH, IDH-2, IDHM, IDP}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815] {aka C-Kit, CD117, MASTC, PBT, SCFR}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, GNAQ (G protein subunit alpha q) [NCBI Gene 2776] {aka CMAL, G-ALPHA-q, GAQ, SWS}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, TERT (telomerase reverse transcriptase) [NCBI Gene 7015] {aka CMM9, DKCA2, DKCB4, EST2, PFBMFT1, TCS1}, GNA11 (G protein subunit alpha 11) [NCBI Gene 2767] {aka FBH, FBH2, FHH2, GNA-11, HG1K, HHC2}
- **Diseases:** colorectal adenocarcinoma (MESH:D003110), Lynch syndrome (MESH:D003123), colorectal carcinogenesis (MESH:D063646), lung cancer (MESH:D008175), chromosomal abnormalities (MESH:D002869), cancers (MESH:D009369), MSI (MESH:D053842), injury to (MESH:D014947), small cell carcinoma (MESH:D018288), pancreatic cancer (MESH:D010190), variant (MESH:D008881), stage III-IV disease (MESH:D007676), Metastasis (MESH:D009362), CRC (MESH:D015179)
- **Chemicals:** adagrasib (MESH:C000718190), encorafenib (MESH:C000601108), panitumumab (MESH:D000077544), trastuzumab (MESH:D000068878), trastuzumab deruxtecan (MESH:C000614160), cetuximab (MESH:D000068818), APR-246 (MESH:C533410), JAB-30300 (-), sotorasib (MESH:C000706028)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** Arg248Trp, p.Arg201His, valine to glutamic acid, Gln61Leu, His178Asp, Arg175His, c.33140A > Gp.His1047Arg, c.1799T > A, Cys420Arg, p.Cys242Ter, c.580C > Tp.Leu194Phe, p.Glu17Lys, Arg273Cys, c.1799T > Ap.Val600Glu, c.3140A > G, Lys139Asn, 602G > A, c.560-1G > A, 35G > A, c.524G > Ap.Arg175His, Gln61His, Glu545Gln, c.35G > Tp.Gly12Val, rs4648551, G12C, Glu542Lys, Ile195Phe, Y220C, 436G > A, Gln61Lys, A146T, Tyr220Ter, G12D, Arg248Gln, c.844C > Tp.Arg282Trp, 706T > G, Val173Leu, 183A > T, c.38G, c.726C > A, c.637C > Tp.Arg213Ter, Gly13Asp  c.3140A > Gp.His1047Arg, c.818G > Ap.Arg273His

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## Figures

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## References

36 references — full list in the complete paper: https://tomesphere.com/paper/PMC12941330/full.md

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Source: https://tomesphere.com/paper/PMC12941330