# Amyotrophic Lateral Sclerosis (ALS) Genetics and Microbiota: A Comprehensive Review

**Authors:** Mostafa Ahmed Kurdi, Hidayah Alotaibi, Asayel Tawfiq Alkhuraymi, Layyan Nassar Aldahery, Ali Fouad Alhawaj, Hamzah Jehad Aldali

PMC · DOI: 10.3390/ijms27041978 · International Journal of Molecular Sciences · 2026-02-19

## TL;DR

This paper reviews the genetic and microbiota factors involved in ALS, highlighting new treatments like gene therapy and microbiome modulation.

## Contribution

The paper provides a comprehensive review of the genetic and microbiota connections in ALS and emerging personalized treatment strategies.

## Key findings

- Genetic mutations in C9orf72, SOD1, TARDBP, and FUS are key targets for novel treatments like Tofersen.
- Dysbiosis involving Akkermansia muciniphila and reduced neuroprotective metabolites may influence ALS progression.
- Personalized treatment strategies using gene therapy and microbiome modulation show promise but remain experimental.

## Abstract

Amyotrophic Lateral Sclerosis (ALS) is a severe, progressive neurodegenerative disorder characterized by the loss of upper and lower motor neurons, affecting 0.5 to 2.6 per 100,000 people, with a median survival of 2 to 5 years. It is increasingly seen as a multisystem disorder, sharing essential clinicopathological features with Frontotemporal Dementia (FTD). This convergence arises from overlapping molecular processes, including severe oxidative stress, glutamate-mediated excitotoxicity, mitochondrial dysfunction, and widespread aggregated TDP-43 proteinopathy in both sporadic and familial cases. Several key genetic factors have been identified, particularly mutations in C9orf72, SOD1, TARDBP, and FUS, which serve as important targets for novel treatments, such as Tofersen, a recently approved SOD1-specific antisense oligonucleotide (ASO) gene therapy. Additionally, there is increasing evidence of the gut–brain connection. Dysbiosis, involving species such as Akkermansia muciniphila, and lower levels of neuroprotective metabolites, such as nicotinamide, may affect the course of the disease. As a result, treatment strategies are shifting toward a personalized approach. This includes using gene therapy, ranging from ASOs and RNA interference (RNAi) to new CRISPR-based genome editing. It also involves exploring microbiome-modulating treatments, such as specific probiotics and Fecal Microbiota Transplantation (FMT). While microbiome and gene therapies remain largely experimental, their potential is promising, as highlighted by the recent approval of Tofersen. These novel approaches could be further enhanced and guided by more robust diagnostic criteria and by investigating early multimodal treatment strategies to slow the progression of this complex disease.

## Linked entities

- **Genes:** C9orf72 (C9orf72-SMCR8 complex subunit) [NCBI Gene 203228], SOD1 (superoxide dismutase 1) [NCBI Gene 6647], TARDBP (TAR DNA binding protein) [NCBI Gene 23435], FUS (FUS RNA binding protein) [NCBI Gene 2521]
- **Chemicals:** nicotinamide (PubChem CID 936)
- **Diseases:** Amyotrophic Lateral Sclerosis (MONDO:0004976), Frontotemporal Dementia (MONDO:0010857)
- **Species:** Akkermansia muciniphila (taxon 239935)

## Full-text entities

- **Genes:** Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, CHEK1 (checkpoint kinase 1) [NCBI Gene 1111] {aka CHK1, OZEMA21}, CASP8 (caspase 8) [NCBI Gene 841] {aka ALPS2B, CAP4, Casp-8, FLICE, MACH, MCH5}, RIPK1 (receptor interacting serine/threonine kinase 1) [NCBI Gene 8737] {aka AIEFL, IMD57, RIP, RIP-1, RIP1}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, NEK1 (NIMA related kinase 1) [NCBI Gene 4750] {aka ALS24, NY-REN-55, OFD2, SRPS2, SRPS2A, SRTD6}, OPTN (optineurin) [NCBI Gene 10133] {aka ALS12, FIP2, GLC1E, HIP7, HYPL, NRP}, C9orf72 (C9orf72-SMCR8 complex subunit) [NCBI Gene 203228] {aka ALSFTD, DENND9, DENNL72, FTDALS, FTDALS1}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, KEAP1 (kelch like ECH associated protein 1) [NCBI Gene 9817] {aka INrf2, KLHL19}, STMN2 (stathmin 2) [NCBI Gene 11075] {aka SCG10, SCGN10}, Tardbp (TAR DNA binding protein) [NCBI Gene 230908] {aka 1190002A23Rik, TDP-43, Tdp43}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, Nlrp3 (NLR family, pyrin domain containing 3) [NCBI Gene 216799] {aka AGTAVPRL, AII/AVP, Cias1, FCAS, FCU, MWS}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, Sod1 (superoxide dismutase 1, soluble) [NCBI Gene 20655] {aka B430204E11Rik, Cu/Zn-SOD, CuZnSOD, Ipo-1, Ipo1, SODC}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, SLC1A2 (solute carrier family 1 member 2) [NCBI Gene 6506] {aka DEE41, EAAT2, EIEE41, GLT-1, GLT1, HBGT}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, CALCOCO2 (calcium binding and coiled-coil domain 2) [NCBI Gene 10241] {aka NDP52}, Tlr4 (toll-like receptor 4) [NCBI Gene 21898] {aka Lps, Ly87, Ran/M1, Rasl2-8}, Fus (fused in sarcoma) [NCBI Gene 233908] {aka D430004D17Rik, D930039C12Rik, Fus1, Tls}, Atxn2 (ataxin 2) [NCBI Gene 20239] {aka 9630045M23Rik, ATX2, Sca2}, SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, CYCS (cytochrome c, somatic) [NCBI Gene 54205] {aka CYC, HCS, THC4}, MATR3 (matrin 3) [NCBI Gene 9782] {aka ALS21, MPD2, VCPDM}, TARDBP (TAR DNA binding protein) [NCBI Gene 23435] {aka ALS10, TDP-43}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, Il18 (interleukin 18) [NCBI Gene 16173] {aka Igif, Il-18}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, FUS (FUS RNA binding protein) [NCBI Gene 2521] {aka ALS6, ETM4, FUS1, HNRNPP2, POMP75, TLS}, SMN1 (survival of motor neuron 1, telomeric) [NCBI Gene 6606] {aka BCD541, GEMIN1, SMA, SMA1, SMA2, SMA3}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, tbk1 (TANK-binding kinase 1) [NCBI Gene 692289] {aka wu:fk70c05, zgc:136548}, UBQLN2 (ubiquilin 2) [NCBI Gene 29978] {aka ALS15, CHAP1, DSK2, HRIHFB2157, N4BP4, PLIC2}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}
- **Diseases:** head injuries (MESH:D006259), death (MESH:D003643), Hereditary Spastic Paraparesis (MESH:D009386), Parkinson's disease (MESH:D010300), Mitochondrial dysfunction (MESH:D028361), neurodegeneration (MESH:D019636), motor-dependent diseases (MESH:D004194), injury to (MESH:D014947), spasticity (MESH:D009128), hepatic inflammation (MESH:D007249), brisk jaw jerk (MESH:D007571), gastrointestinal symptoms (MESH:D012817), muscle atrophy (MESH:D009133), FOSMN (MESH:D005155), fibrosis (MESH:D005355), dysphagia (MESH:D003680), ALS (MESH:D000690), PMA (MESH:D009134), weight loss (MESH:D015431), abdominal pain (MESH:D015746), trigeminal sensory impairment (MESH:D020433), liver fibrosis (MESH:D008103), toxicity (MESH:D064420), proteinopathies (MESH:D057165), atrophy (MESH:D001284), anxiety (MESH:D001007), neuroinflammation (MESH:D000090862), retinal dystrophies (MESH:D058499), Alzheimer's disease (MESH:D000544), neurotoxic (MESH:D020258), axonal transport defects (MESH:C536778), bowel motions (MESH:D009041), hemoglobinopathies (MESH:D006453), Dysbiosis (MESH:D064806), Pseudobulbar palsy (MESH:D020828), limb weakness (MESH:D018908), cancer (MESH:D009369), slowed voluntary movement (MESH:D020754), dysarthria (MESH:D004401), wasting (MESH:D019282), paralysis (MESH:D010243), muscle loss (MESH:D009135), conduction block (MESH:D006327), multisystem disorder (MESH:D019578), Respiratory abnormalities (MESH:D015619), constipation (MESH:D003248), respiratory failure (MESH:D012131), degeneration (MESH:D009410), LMN dysfunction (MESH:D016472), hemiplegic (MESH:D020233), depression (MESH:D003866), head and neck squamous cell carcinoma (MESH:D000077195), Cognitive impairment (MESH:D003072), excitotoxic damage (MESH:D020263), neuropathological (MESH:D009422), chronic diseases (MESH:D002908), motor impairment (MESH:D000068079), axonal loss (MESH:D012183), fasciculations (MESH:D005207), Duchenne muscular dystrophy (MESH:D020388)
- **Chemicals:** oligofructose (MESH:C120489), A. muciniphila (-), curcumin (MESH:D003474), Tofersen (MESH:C000709090), propionate (MESH:D011422), FOS (MESH:C116580), pterostilbene (MESH:C107773), carbohydrates (MESH:D002241), necro-sulfonamide (MESH:C570695), Butyrate (MESH:D002087), oxalate (MESH:D010070), pectin (MESH:D010368), reactive nitrogen species (MESH:D026361), prostaglandins (MESH:D011453), cyclodextrins (MESH:D003505), quercetin (MESH:D011794), LPS (MESH:D008070), resistant starch (MESH:D000084922), lipid (MESH:D008055), catechins (MESH:D002392), lactulose (MESH:D007792), ATP (MESH:D000255), Polyphenols (MESH:D059808), maltooligosaccharides (MESH:C021705), nicotinamide (MESH:D009536), Prebiotics (MESH:D056692), glutathione (MESH:D005978), nicotinamide riboside (MESH:C018613), nitric oxide (MESH:D009569), SCFA (MESH:D005232), hydroxyl radicals (MESH:D017665), quinolinic acid (MESH:D017378), ROS (MESH:D017382), calcium (MESH:D002118), acetate (MESH:D000085), resveratrol (MESH:D000077185), NAD+ (MESH:D009243), alcohol (MESH:D000438), glutamate (MESH:D018698), inulin (MESH:D007444)
- **Species:** Clostridium tyrobutyricum (species) [taxon 1519], Danio rerio (leopard danio, species) [taxon 7955], Adeno-associated virus (species) [taxon 272636], Akkermansia muciniphila (species) [taxon 239935], Bacteroides stercoris (species) [taxon 46506], Bifidobacterium (genus) [taxon 1678], Lactobacillus (genus) [taxon 1578], Homo sapiens (human, species) [taxon 9606], Faecalibacterium prausnitzii (species) [taxon 853], Prevotella (genus) [taxon 838], Mus musculus (house mouse, species) [taxon 10090], Butyrivibrio fibrisolvens (species) [taxon 831], Caenorhabditis elegans (species) [taxon 6239], Parabacteroides distasonis (species) [taxon 823], gut metagenome (species) [taxon 749906], Mediterraneibacter torques (species) [taxon 33039], Bacteroides uniformis (species) [taxon 820], Phocaeicola vulgatus (species) [taxon 821]
- **Mutations:** D90A, G262R, P438L, Tyr374Ter, G93A, serine/threonine
- **Cell lines:** TAR4/4 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_WI26)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12941290/full.md

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12941290/full.md

## References

164 references — full list in the complete paper: https://tomesphere.com/paper/PMC12941290/full.md

---
Source: https://tomesphere.com/paper/PMC12941290