# Xp22.33 Duplication Encompassing PAR1 in a Male with Syndromic Neurodevelopmental Disorder and Tall Stature

**Authors:** Dibyendu Dutta, Xi Luo, Ria Garg

PMC · DOI: 10.3390/genes17020238 · Genes · 2026-02-15

## TL;DR

A male with a rare X chromosome duplication shows tall stature and neurodevelopmental issues, suggesting gene dosage effects in the PAR1 region.

## Contribution

First detailed clinical report of a near-complete, isolated PAR1 duplication in a male with neurodevelopmental and growth features.

## Key findings

- The duplication includes 15 protein-coding genes that escape X-inactivation, potentially contributing to the phenotype.
- Clinical features include global developmental delay, autism, seizures, and tall stature.
- The findings suggest a possible dosage-related effect of genes in the duplicated Xp22.33 region.

## Abstract

Background: Duplications involving Xp22.33, particularly within the pseudoautosomal region 1 (PAR1), are rare. While copy number variants (CNVs) involving SHOX, a dosage-sensitive gene in PAR1, are known to cause growth disorders, large duplications encompassing the entire PAR1 region and beyond show variable associations with skeletal and neurodevelopmental abnormalities. Duplication of the near-complete, isolated PAR1 with a comprehensive clinical description has not been reported. Case Presentation: We report a male patient with a 2.49 Mb duplication encompassing nearly the entire PAR1 region (chrX:200854–2692897, GRCh37). Clinical features included global developmental delay (GDD), autism spectrum disorder (ASD), recurrent seizures, hypotonia with joint hypermobility, dysmorphic features, and proportionate tall stature. The duplicated segment contains 30 genes, including 15 protein-coding genes that escape X-inactivation. Among these, SHOX, DHRSX, ASMT, and CSF2RA are notable candidates contributing to the observed phenotype. Conclusions: This report presents a detailed clinical characterization of a rare, near-complete, isolated PAR1 duplication in a male individual. The co-occurrence of tall stature, GDD, ASD, and seizures raises the possibility of a dosage-related phenotypic effect involving one or more genes within the duplicated interval. While causality cannot be definitively established, these observations contribute to the emerging understanding of the functional consequences of Xp22.33 duplications and suggest that increased copy number within this region may be associated with a clinically significant neurodevelopmental phenotype.

## Linked entities

- **Genes:** SHOX (SHOX homeobox) [NCBI Gene 6473], DHRSX (dehydrogenase/reductase X-linked) [NCBI Gene 207063], ASMT (acetylserotonin O-methyltransferase) [NCBI Gene 438], CSF2RA (colony stimulating factor 2 receptor subunit alpha) [NCBI Gene 1438]
- **Diseases:** autism spectrum disorder (MONDO:0005258)

## Full-text entities

- **Genes:** ITGA4 (integrin subunit alpha 4) [NCBI Gene 3676] {aka CD49D, IA4}, SLC52A1 (solute carrier family 52 member 1) [NCBI Gene 55065] {aka GPCR42, GPR172B, PAR2, RBFVD, RFT1, RFVT1}, DHRSX (dehydrogenase/reductase X-linked) [NCBI Gene 207063] {aka CDG1DD, CXorf11, DHRS5X, DHRS5Y, DHRSXY, DHRSY}, SLC25A6 (solute carrier family 25 member 6) [NCBI Gene 293] {aka AAC3, ANT, ANT 2, ANT 3, ANT3, ANT3Y}, F2R (coagulation factor II thrombin receptor) [NCBI Gene 2149] {aka CF2R, HTR, PAR-1, PAR1, TR}, ASMT (acetylserotonin O-methyltransferase) [NCBI Gene 438] {aka ASMTY, HIOMT, HIOMTY}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, PPP2R3B (protein phosphatase 2 regulatory subunit B''beta) [NCBI Gene 28227] {aka NYREN8, PPP2R3L, PPP2R3LY, PR48, PR70}, HSD17B6 (hydroxysteroid 17-beta dehydrogenase 6) [NCBI Gene 8630] {aka HSE, RODH, SDR9C6}, SHOX (SHOX homeobox) [NCBI Gene 6473] {aka GCFX, PHOG, SHOX1, SHOXY, SS}, CD99 (CD99 molecule (Xg blood group)) [NCBI Gene 4267] {aka HBA71, MIC2, MIC2X, MIC2Y, MSK5X}, CSF2RA (colony stimulating factor 2 receptor subunit alpha) [NCBI Gene 1438] {aka CD116, CDw116, CSF2R, CSF2RAX, CSF2RAY, CSF2RX}, CAVIN2 (caveolae associated protein 2) [NCBI Gene 8436] {aka PS-p68, SDPR, SDR, cavin-2}, ASMTL (acetylserotonin O-methyltransferase like) [NCBI Gene 8623] {aka ASMTLX, ASMTLY, ASTML}
- **Diseases:** neuronal maturation (MESH:D003924), joint hypermobility (MESH:D007593), wheezing (MESH:D012135), skeletal anomalies (MESH:C535534), heart failure (MESH:D006333), tall (MESH:C535725), Jacob syndrome (MESH:C537560), constipation (MESH:D003248), ISS (MESH:C565805), cardiac abnormalities (MESH:D018376), sex chromosome aneuploidies (MESH:D025064), bronchiolitis (MESH:D001988), Syndromic Neurodevelopmental Disorder (MESH:D002658), cognitive deficits (MESH:D003072), aneuploidies (MESH:D000782), haploinsufficiency syndromes (MESH:C565160), corpus callosum (MESH:D061085), chronic (MESH:D002908), Tall Stature (MESH:C537975), Hypotonia (MESH:D009123), epilepsy (MESH:D004827), intellectual disability (MESH:D008607), immunodeficiency (MESH:D007153), viral infections (MESH:D014777), ASMTL (MESH:C536512), Leri-Weill dyschondrosteosis (MESH:C537119), myocardial infarction (MESH:D009203), congestion (MESH:D002311), neurodevelopmental delay (MESH:D006968), infection (MESH:D007239), COVID-19 infection (MESH:D000086382), 47,XYY (MESH:C535317), primary endocrine disorder (MESH:D004700), ADHD (MESH:D001289), 47,XXX (MESH:C535318), Craniofacial anomalies (MESH:D019465), delayed speech and language development (MESH:D007805), GDD (MESH:D001037), congenital heart defects (MESH:D006330), choroid plexus cyst (MESH:D020288), febrile respiratory illness (MESH:D012131), PAP (MESH:D011649), glycosylation disorders (MESH:D018981), Autoimmune disorder (MESH:D001327), obesity (MESH:D009765), clubfoot (MESH:D003025), chronic obstructive pulmonary disease (MESH:D029424), craniofacial dysmorphism (MESH:C537512), hand-foot-and-mouth disease (MESH:D006232), Seizure (MESH:D012640), OMIM (MESH:D030342), respiratory distress (MESH:D012128), febrile illnesses (MESH:D005334), acute otitis media (MESH:D010033), brachycephaly (MESH:D003398), hypermobility (MESH:C536196), short toes (MESH:D000070592), injury to (MESH:D014947), congenital anomalies (MESH:D000013), nasolacrimal duct obstruction (MESH:D007767)
- **Chemicals:** N-acetylserotonin (MESH:C006389), antiseizure (-), Melatonin (MESH:D008550), dexamethasone (MESH:D003907), dolichol (MESH:D004286), polyethylene glycol (MESH:D011092)
- **Species:** Homo sapiens (human, species) [taxon 9606], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Escherichia coli (E. coli, species) [taxon 562], Bacillus subtilis (species) [taxon 1423]
- **Mutations:** chrX:200854-2692897

## Full text

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## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12941262/full.md

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Source: https://tomesphere.com/paper/PMC12941262