# Structural Characterization of Glycoprotein Glycans and Glycosaminoglycans of Brain Tissues in Slc35a3-Knockout Mice

**Authors:** Ikumi Hirose, Hisatoshi Hanamatsu, Shuji Mizumoto, Rina Yamashita, Shuhei Yamada, Jun-ichi Furukawa, Tatsuya Furuichi, Hirokazu Yagi

PMC · DOI: 10.3390/ijms27041643 · International Journal of Molecular Sciences · 2026-02-08

## TL;DR

This study examines how a genetic knockout in mice affects brain glycosylation, revealing changes in complex sugar structures linked to neurological disorders.

## Contribution

The study provides new insights into how SLC35A3 deficiency alters neural glycan structures, linking it to a neurological disorder in humans.

## Key findings

- Knockout mouse brains showed reduced complex N-glycans and increased high-mannose species.
- O-glycan core-2-type species decreased, while disialyl core-1 remained stable.
- Total glycosaminoglycan output was preserved despite SLC35A3 deficiency.

## Abstract

Glycosylation depends on luminal nucleotide sugars delivered by solute carrier 35 (SLC35) transporters. SLC35A3 is a uridine diphosphate N-acetylglucosamine (UDP-GlcNAc) transporter. In humans, biallelic mutations in SLC35A3 cause arthrogryposis, mental retardation, and seizures (AMRS). To define how loss of SLC35A3 function reshapes the neural glycome, we profiled N-, O-, and glycosaminoglycans (GAGs) in Slc35a3 knockout mouse brains. N- and O-glycans were analyzed by MALDI-TOF MS, and GAG disaccharides were quantified by anion-exchange HPLC. Knockout mouse brains exhibited attenuation of complex-type N-glycans with a reciprocal rise in high-mannose species, as revealed by MALDI-TOF MS profiling. In contrast, ConA lectin blotting showed no significant change, consistent with its preferential detection of mannose-rich glycans. Branching analysis revealed loss of tri- and tetra-antennary structures compared with biantennary species. O-glycan profiling showed core-2-type species (Hex2HexNAc2 backbone) decreased. The dominant disialyl core-1 remained stable. Total GAG output (chondroitin/dermatan sulfate, heparan sulfate, and hyaluronan) was preserved. These findings support a microdomain model in which SLC35A3 acts as a locally effective supplier of UDP-GlcNAc to MGAT4 (branching N-acetylglucosaminyltransferase that installs the β1,4-GlcNAc arm) in the brain, while alternative routes buffer UDP-GlcNAc delivery for GAG and mucin-type O-glycan biosynthesis. Accordingly, AMRS may be attributed to impaired higher-order N-glycan branching in the brain.

## Linked entities

- **Genes:** SLC35A3 (solute carrier family 35 member A3) [NCBI Gene 23443], LOC101740839 (alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A) [NCBI Gene 101740839]
- **Chemicals:** UDP-GlcNAc (PubChem CID 445675), heparan sulfate (PubChem CID 137699201)
- **Diseases:** arthrogryposis (MONDO:0008779), AMRS (MONDO:0014248)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** SLC35D2 (solute carrier family 35 member D2) [NCBI Gene 11046] {aka HFRC1, SQV7L, UGTrel8, hfrc}, Slc35a3 (solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3) [NCBI Gene 229782] {aka 2310050P13Rik}, Slc35d2 (solute carrier family 35, member D2) [NCBI Gene 70484] {aka 5730408I21Rik, SQV7L, UGTrel8, hfrc, mUGTrel8}, SLC35D4 (solute carrier family 35 member D4) [NCBI Gene 85019] {aka C18orf45, TMEM241, hVVT}, Gprasp3 (G protein-coupled receptor associated sorting protein family member 3) [NCBI Gene 338363] {aka 6030446N20Rik, Slc35d4, Tmem241}, Acan (aggrecan) [NCBI Gene 11595] {aka Agc, Agc1, CSPCP, Cspg1, b2b183Clo, cmd}, SLC35A3 (solute carrier family 35 member A3) [NCBI Gene 23443] {aka AMRS}, Mela (melanoma antigen) [NCBI Gene 17276] {aka 80kDa, Ag, env, gag, gag-pol, pol}, SLC35A2 (solute carrier family 35 member A2) [NCBI Gene 7355] {aka CDG2M, CDGX, UDP-Gal-Tr, UGALT, UGAT, UGT}, Gcnt1 (glucosaminyl (N-acetyl) transferase 1, core 2) [NCBI Gene 14537] {aka 5630400D21Rik, B130048E03, C2 GlcNAcT, C2GNT, C2GlcNAcT, C2GnT-L}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Gcnt2 (glucosaminyl (N-acetyl) transferase 2 (I blood group)) [NCBI Gene 14538] {aka 5330430K10Rik, IGnT, IGnTA, IGnTB, IGnTC}, Slc35a2 (solute carrier family 35 (UDP-galactose transporter), member A2) [NCBI Gene 22232] {aka Had-1, Had1, Sfc8, UGT, Ugalt}, Mgat5 (mannoside acetylglucosaminyltransferase 5) [NCBI Gene 107895] {aka 4930471A21Rik, 5330407H02Rik, GlcNAc-TV}
- **Diseases:** overdose (MESH:D062787), dislocation (MESH:D004204), autosomal recessive skeletal dysplasia (MESH:C535858), vertebral abnormalities (MESH:C535781), Epilepsy (MESH:D004827), seizure (MESH:D012640), CDG (MESH:C567859), dwarfism (MESH:D004392), CMV (MESH:D003586), congenital disorder of glycosylation (MESH:D018981), NSTs (MESH:C566309), pulmonary injury (MESH:D055370), chondrodysplasia (MESH:D010009), AMRS (OMIM:615553), injury to (MESH:D014947)
- **Chemicals:** D-glucosamine (MESH:D005944), ether (MESH:D004986), CS/DS (MESH:D002104), BEP (MESH:C038328), PVDF (MESH:C024865), UMP (MESH:D014542), lipid (MESH:D008055), sialic acids (MESH:D012794), CS (MESH:D002586), GlcNAc (MESH:D000117), amine (MESH:D000588), MTT (MESH:C070243), silica (MESH:D012822), GAG (MESH:D006025), HS (MESH:D006497), DS (MESH:D003903), -mannose-type N-glycans (-), HA (MESH:D006820), cholesterol (MESH:D002784), propylamine (MESH:D011437), SDS (MESH:D012967), N-acetyl-D-galactosamine (MESH:D000116), iodoacetamide (MESH:D007460), Disaccharide (MESH:D004187), isoflurane (MESH:D007530), 1-phenyl-3-methyl-5-pyrazolone (MESH:D000077553), glycogen (MESH:D006003), 6S (MESH:C012008), luminal (MESH:D010634), water (MESH:D014867), amide (MESH:D000577), mannose-6-phosphate (MESH:C027693), pentobarbital (MESH:D010424), tricarboxylic acid (MESH:D014233), chitotetraose (MESH:C012238), sialic acid (MESH:D019158), ester (MESH:D004952), N (MESH:D009584), 2-aminobenzamide (MESH:C000219), maltotetraose (MESH:C009819), Glycan (MESH:D011134), O (MESH:D010100), hexose (MESH:D006601), TCEP (MESH:C080938), sugars (MESH:D000073893), chitobiose (MESH:C032438), mannose (MESH:D008358), keratan sulfate (MESH:D007632), chondroitin sulfate (MESH:D002809), NeuAcalpha2-3Galbeta1-3(NeuAcalpha2-6)GalNAc (MESH:C086047), Galbeta1-3(GlcNAcbeta1-6)GalNAc (MESH:C073212)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** DELTA
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

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## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC12941149/full.md

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Source: https://tomesphere.com/paper/PMC12941149