# m6A RNA Methylation Is Increased in Tumour Invasive Regions and Influences Invasive Capability and Chemotherapeutic Sensitivity in Adult Glioblastoma

**Authors:** Masar Radhi, Jonathan Rowlinson, Lauryn Walker, Simon Deacon, Helen Miranda Knight, Stuart Smith

PMC · DOI: 10.3390/ijms27041967 · International Journal of Molecular Sciences · 2026-02-18

## TL;DR

This study shows that m6A RNA methylation is higher in invasive parts of brain tumors and affects tumor spread and response to chemotherapy.

## Contribution

The study identifies m6A RNA modification as a novel factor influencing glioblastoma invasion and treatment resistance.

## Key findings

- m6A RNA levels and effector proteins are elevated in invasive glioblastoma regions.
- Reducing m6A levels impairs tumor cell invasion and increases chemotherapy sensitivity.
- Higher WTAP and FTO expression correlates with worse patient survival.

## Abstract

Adult glioblastoma multiforme (GBM) is the most common primary malignant brain tumour caused by multiple molecular factors. N6-methyl-adenosine (m6A) is an abundant RNA modification that governs cellular RNA metabolism. We hypothesise that changes in m6A-modified RNA and regulatory machinery such as the writer proteins, Methyltransferase 3 (METTL3) and WT1-associating protein (WTAP), the demethyltransferase protein, and Alpha-ketoglutarate dependent dioxygenase (FTO), are driving factors of GBM development and treatment resistance. Here, we investigated m6A-RNA spatial and quantitative abundance and expression of m6A effector proteins directly in GBM tissue and patient-derived low-passage primary adult GBM and low-grade glioma (LGG) cells, and explored the consequences of m6A-RNA disruption on GBM invasive capabilities, self-renewal and responsiveness to temozolomide (TMZ). We observed that METTL3, WTAP and FTO transcript and protein expression were significantly increased in cells derived from invasive regions of GBM tumours, and elevated WTAP and FTO expression significantly correlated with poor GBM patient survival. We further found that the abundance of m6A-modified RNA in GBM tumours was significant higher in rim and invasive tissue, as well as significantly higher in patient-derived cells from GBM tumour invasive regions. Functional depletion of these effector proteins significantly altered m6A levels on and the expression of the pluripotency stem cell marker SOX2 while also impairing self-renewal and cell invasion behaviour and increasing sensitivity to TMZ. The targeting of RNA modification regulatory mechanisms reveals novel therapeutic strategies aimed at improving clinical outcomes for GBM patients.

## Linked entities

- **Genes:** METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339], WTAP (WT1 associated protein) [NCBI Gene 9589], FTO (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 79068], SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657]
- **Chemicals:** temozolomide (PubChem CID 5394)
- **Diseases:** glioblastoma multiforme (MONDO:0018177), low-grade glioma (MONDO:0021637)

## Full-text entities

- **Genes:** METTL14 (methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit) [NCBI Gene 57721] {aka hMETTL14}, Wtap (WT1 associating protein) [NCBI Gene 60532] {aka 2810408K05Rik, 9430038B09Rik}, SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657] {aka ANOP3, MCOPS3}, Sox2 (SRY (sex determining region Y)-box 2) [NCBI Gene 20674] {aka Sox-2, lcc, ysb}, METTL5 (methyltransferase 5, N6-adenosine) [NCBI Gene 29081] {aka HSPC133, MRT72}, METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339] {aka IME4, M6A, MT-A70, Spo8, hMETTL3}, FOXM1 (forkhead box M1) [NCBI Gene 2305] {aka FKHL16, FOXM1A, FOXM1B, FOXM1C, HFH-11, HFH11}, MRAP (melanocortin 2 receptor accessory protein) [NCBI Gene 56246] {aka B27, C21orf61, FALP, GCCD2, MRAP1}, EIF3H (eukaryotic translation initiation factor 3 subunit H) [NCBI Gene 8667] {aka EIF3S3, eIF3-gamma, eIF3-p40}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, FTO (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 79068] {aka ALKBH9, BMIQ14, GDFD, IFEX9}, WTAP (WT1 associated protein) [NCBI Gene 9589] {aka Mum2}, NES (nestin) [NCBI Gene 10763] {aka Nbla00170}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, Fto (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 26383] {aka mKIAA1752}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, Mettl3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56335] {aka 2310024F18Rik, M6A, Spo8}, ALKBH5 (alkB homolog 5, RNA demethylase) [NCBI Gene 54890] {aka ABH5, OFOXD, OFOXD1}
- **Diseases:** Adult (MESH:C538052), injury to (MESH:D014947), epileptic (MESH:D004827), glioma (MESH:D005910), lung cancer (MESH:D008175), GMB tumours (MESH:D009369), leukaemia (MESH:D015458), LGG (MESH:D008228), GSC oncogenesis (MESH:D063646), gastric, breast and liver cancers (MESH:D013274), breast cancer (MESH:D001943), GBM (MESH:D005909), WHO grade 2 astrocytoma (MESH:D001254), Glioma brain tumour (MESH:D001932), hypoxia (MESH:D000860), invasive (MESH:D009361), AML (MESH:D015470)
- **Chemicals:** Lithium carbonate (MESH:D016651), Diacerein (MESH:C025292), sodium citrate (MESH:D000077559), Phalloidin (MESH:D010590), haematoxylin (MESH:D006416), Alexa-fluor (-), N6-methyl-adenosine (MESH:C010223), paraffin (MESH:D010232), methanol (MESH:D000432), crystal violet (MESH:D005840), Triton-X-100 (MESH:D017830), wax (MESH:D014885), Xylene (MESH:D014992), Lipofectamine (MESH:C086724), TMZ (MESH:D000077204), F12 (MESH:C007782), N2 (MESH:D009584), MA2 (MESH:C029090), paraformaldehyde (MESH:C003043), glycogen (MESH:D006003), m6A (MESH:C005955), CO2 (MESH:D002245), L-glutamine (MESH:D005973), ethanol (MESH:D000431), sodium acetate (MESH:D019346), heparin (MESH:D006493), DAB (MESH:C000469)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Mycoplasma (genus) [taxon 2093]
- **Cell lines:** U87-GBM-1 — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_W447), GIN28 — Homo sapiens (Human), Finite cell line (CVCL_F842), HA — Helicoverpa armigera (Cotton bollworm), Spontaneously immortalized cell line (CVCL_Z978)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12941147/full.md

## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12941147/full.md

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Source: https://tomesphere.com/paper/PMC12941147