# CRISPR-Mediated Silkworm: The Oncoming Agricultural Revolutions and a Rising Model Organism

**Authors:** Qiaoling Sun, Yongkang Guo, Liting Wang, Ling Jia, Peng Wei, Sanyuan Ma

PMC · DOI: 10.3390/genes17020230 · Genes · 2026-02-12

## TL;DR

CRISPR technology is transforming silkworm research and agriculture by enabling precise genetic modifications that improve silk production and disease resistance.

## Contribution

The paper highlights how CRISPR has evolved in silkworms from basic gene editing to genome-wide screening, enabling new applications in biomanufacturing and sustainable agriculture.

## Key findings

- CRISPR allows precise genetic modifications in silkworms, enhancing traits like disease resistance and silk production.
- High-quality genomes and pangenomes have made silkworms a key model for integrating biological datasets.
- AI-assisted CRISPR predictions are improving the efficiency of trait modifications and eco-friendly silk production.

## Abstract

The silkworm (Bombyx mori) is essential to sericulture and is also becoming a key model organism in genomics and agriculture. For decades, genetic studies of the silkworm were limited by inefficient and inflexible genome tools. CRISPR genome editing allows precise and scalable alterations to genes regulating development, physiology, and industrial traits. This review summarizes silkworm genome-editing breakthroughs, highlighting CRISPR’s evolution from simple gene knockouts to large-scale genome-wide screening. We highlight how these advancements contribute to disease resistance, higher yields, and the development of new silk-based materials, as well as how they influence the development and growth rate of the sericulture. The creation of high-quality reference genomes, pangenomes, and genome-wide screening systems has made the silkworm a major model for integrating multiple biological datasets and approaches, such as genomic, transcriptomic, and proteomic. By considering the unique biological characteristics of the silkworm, this provides new insights for research on silk biology, piRNA synthetic biology, and hormonal signaling regulation. Finally, we examine new areas at the intersection of CRISPR, pangenomics, and artificial intelligence (AI) and suggest future paths for molecular breeding, pest control, and synthetic biology. Moreover, AI-assisted prediction of CRISPR outcomes is utilized to inform the design of targeted trait modifications, representing an approach to enhancing biomanufacturing efficiency and eco-friendly silk production. Together, these advances have made the silkworm a flexible genetic platform and an important part of sustainable agriculture and biomanufacturing.

## Linked entities

- **Species:** Bombyx mori (taxon 7091)

## Full-text entities

- **Genes:** USP [NCBI Gene 693034], METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339] {aka IME4, M6A, MT-A70, Spo8, hMETTL3}, NOS1 (nitric oxide synthase 1) [NCBI Gene 692510] {aka BmNOS, BmNOS1, NOS, iNOS-LP}, Suc1 (beta-fructofuranosidase) [NCBI Gene 100145905] {aka BmSuc1}, Ser1 [NCBI Gene 693057], Iap2 [NCBI Gene 100529214], EcR [NCBI Gene 692756], METTL14 (methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit) [NCBI Gene 57721] {aka hMETTL14}, vitellogenin [NCBI Gene 692741], AKT [NCBI Gene 100141438], Cph18 [NCBI Gene 100379478], MET1 (methoprene-tolerant protein 1) [NCBI Gene 100141429] {aka BmMET1, Met}, Cocoonase [NCBI Gene 733072], Gr66 [NCBI Gene 100862779], HSP70 [NCBI Gene 692822], FIBH (silk fibroin heavy chain) [NCBI Gene 693030] {aka Fib-h}, ICE (ICE protein) [NCBI Gene 692735] {aka BmICE, ICE-2, ICE-5}, olfactory receptor [NCBI Gene 101742158], Fib-l (silk fibroin light chain) [NCBI Gene 693047] {aka FIBL, Fib-1, fibroin}, CPR21 (cuticular protein RR-1 motif 21) [NCBI Gene 692438] {aka BMWCP10, BmorCPR21, Wcp10}, AGO3 (Argonaute 3) [NCBI Gene 100125337] {aka BmAGO3, Piwi, Siwi2}, CPG25 [NCBI Gene 100379500], Blos2 (biogenesis of lysosome-related organelles complex 1 subunit 2) [NCBI Gene 100328579] {aka BmBLOS2}, CLIP2 [NCBI Gene 692384], PI3K [NCBI Gene 100158253]
- **Diseases:** toxicity (MESH:D064420), infection (MESH:D007239), viral infections (MESH:D014777), Microsporidia (MESH:D016881), embryonic lethality (MESH:D020964), bacterial and fungal infections (MESH:D009181), bacterial infection (MESH:D001424), injury to (MESH:D014947), weight gain (MESH:D015430)
- **Chemicals:** fatty acid (MESH:D005227), ISQ (MESH:C016527), Kevlar (-), CGA (MESH:D002726), cadmium (MESH:D002104), steroid (MESH:D013256), m6A (MESH:C005955), phosphate (MESH:D010710), nylon (MESH:D009757), N6-methyladenosine (MESH:C010223), metal (MESH:D008670), cadmium chloride (MESH:D019256), sodium fluoride (MESH:D012969), 20-hydroxyecdysone (MESH:D004441), cis-jasmone (MESH:C086299)
- **Species:** Homo sapiens (human, species) [taxon 9606], Quercus mongolica (Mongolian oak, species) [taxon 103485], Microsporidia (microsporidians, phylum) [taxon 6029], Danio rerio (leopard danio, species) [taxon 7955], Drosophila melanogaster (fruit fly, species) [taxon 7227], Bombyx mori (domestic silkworm, species) [taxon 7091], Beauveria bassiana (species) [taxon 176275], Pyrus communis (pear, species) [taxon 23211], Caenorhabditis elegans (species) [taxon 6239], Glycine max (soybean, species) [taxon 3847], Malus domestica (apple, species) [taxon 3750], Plutella xylostella (cabbage moth, species) [taxon 51655], Nosema bombycis (species) [taxon 27978], Bombyx mori nucleopolyhedrovirus (no rank) [taxon 271108], Bombyx mandarina (wild silkworm, species) [taxon 7092]
- **Mutations:** C to T, T2T, A840H
- **Cell lines:** BmN — Bombyx mori (Silk moth), Spontaneously immortalized cell line (CVCL_Z633), BmN4 — Bombyx mori (Silk moth), Spontaneously immortalized cell line (CVCL_Z634), BmE — Bombyx mori (Silk moth), Spontaneously immortalized cell line (CVCL_Z087)

## Full text

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## Figures

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## References

186 references — full list in the complete paper: https://tomesphere.com/paper/PMC12941003/full.md

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Source: https://tomesphere.com/paper/PMC12941003