# The Axon as a Self-Modifying Computational System: Autonomous Inference, Adaptive Propagation, and AI-Enabled Mechanistic Insight

**Authors:** Matei Șerban, Corneliu Toader, Răzvan-Adrian Covache-Busuioc

PMC · DOI: 10.3390/ijms27041826 · International Journal of Molecular Sciences · 2026-02-14

## TL;DR

This paper explores how axons dynamically adjust their structure and function to influence signal transmission, suggesting they act as adaptive computational systems.

## Contribution

The paper synthesizes existing research to propose a unified framework for axonal computation involving adaptive microstates.

## Key findings

- Axons can rapidly modify their structure and ion channel distribution to alter signal excitability.
- Myelin-associated glia temporarily modulate axonal conduction through metabolic and structural changes.
- AI-based techniques reveal axons generate distinct electromechanical states affecting signal timing and routing.

## Abstract

Research has demonstrated that axonal signaling processes are influenced by both static structural factors and dynamic metabolic and electro-dynamic processes. Imaging, computational modeling and research in molecular neuroscience have demonstrated that multiple processes contribute to axonal signal processing, including periodic rearrangement of cytoskeletal structures and membrane structures, and redistribution of ion channel clusters and organelles (such as mitochondria), which occur rapidly and transiently to modify excitability. The dynamics of energy production and distribution also vary between regions of the axon and at different time points during signal generation and transmission. Additionally, myelin-associated glia may temporarily modulate their metabolic and structural contributions to axonal conduction. Advanced AI-based techniques for mapping and simulating ultrastructure and the use of closed-loop perturbation experiments demonstrate that axons can generate multiple distinct electromechanical states, and therefore potentially influence both the timing of signals generated by the axon, the routing of signals to branches of the axon, and the robustness of signal propagation. While the existence of these adaptive microstates appears well established, there are many aspects of their influence on circuit level function that are poorly understood. In summary, these data support the concept that axonal conduction represents a continuum of reversible and state-dependent configurations generated by integrated interactions among molecular, structural and energetic processes. Therefore, this review will attempt to synthesize the available literature into a unified conceptual framework and identify areas of uncertainty that may direct future research into the adaptive processes underlying axonal computation.

## Full-text entities

- **Genes:** SLC16A1 (solute carrier family 16 member 1) [NCBI Gene 6566] {aka HHF7, MCT, MCT1, MCT1D}, RPL38 (ribosomal protein L38) [NCBI Gene 6169] {aka L38, eL38}, KCNA1 (potassium voltage-gated channel subfamily A member 1) [NCBI Gene 3736] {aka AEMK, EA1, HBK1, HUK1, KV1.1, MBK1}, OPA1 (OPA1 mitochondrial dynamin like GTPase) [NCBI Gene 4976] {aka BERHS, MGM1, MTDPS14, MTDPS14A, MTDPS14B, NPG}, KCNA2 (potassium voltage-gated channel subfamily A member 2) [NCBI Gene 3737] {aka DEE32, EIEE32, HBK5, HK4, HUKIV, KV1.2}, RMDN3 (regulator of microtubule dynamics 3) [NCBI Gene 55177] {aka FAM82A2, FAM82C, RMD-3, RMD3, ptpip51}, PI4KA (phosphatidylinositol 4-kinase alpha) [NCBI Gene 5297] {aka GIDID2, PI4K-ALPHA, PIK4CA, PMGYCHA, SPG84, pi4K230}, PLCB3 (phospholipase C beta 3) [NCBI Gene 5331] {aka SMDCD}, KCNQ2 (potassium voltage-gated channel subfamily Q member 2) [NCBI Gene 3785] {aka BFNC, DEE7, EBN, EBN1, ENB1, HNSPC}, SGCG (sarcoglycan gamma) [NCBI Gene 6445] {aka 35DAG, A4, DAGA4, DMDA, DMDA1, LGMD2C}, TARDBP (TAR DNA binding protein) [NCBI Gene 23435] {aka ALS10, TDP-43}, RPS29 (ribosomal protein S29) [NCBI Gene 6235] {aka DBA13, S29, uS14}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, SLC16A7 (solute carrier family 16 member 7) [NCBI Gene 9194] {aka MCT2}, KCNQ3 (potassium voltage-gated channel subfamily Q member 3) [NCBI Gene 3786] {aka BFNC2, EBN2, KV7.3}, TRMT61A (tRNA methyltransferase 61A) [NCBI Gene 115708] {aka C14orf172, GCD14, Gcd14p, TRM61, hTRM61}, G3BP1 (G3BP stress granule assembly factor 1) [NCBI Gene 10146] {aka G3BP, HDH-VIII}, PRRT2 (proline rich transmembrane protein 2) [NCBI Gene 112476] {aka BFIC2, BFIS2, DSPB3, DYT10, EKD1, FICCA}, TUBB3 (tubulin beta 3 class III) [NCBI Gene 10381] {aka CDCBM, CDCBM1, CFEOM3, CFEOM3A, FEOM3, TUBB4}, PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1) [NCBI Gene 5562] {aka AMPK, AMPK alpha 1, AMPKa1}, SNPH (syntaphilin) [NCBI Gene 9751], TRMT10C (tRNA methyltransferase 10C, mitochondrial RNase P subunit) [NCBI Gene 54931] {aka COXPD30, HNYA, MRPP1, RG9MTD1}, AKAP1 (A-kinase anchoring protein 1) [NCBI Gene 8165] {aka AKAP, AKAP121, AKAP149, AKAP84, D-AKAP1, PPP1R43}, TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, CRMP1 (collapsin response mediator protein 1) [NCBI Gene 1400] {aka CRMP-1, DPYSL1, DRP-1, DRP1, ULIP-3}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, ANK3 (ankyrin 3) [NCBI Gene 288] {aka ANKYRIN-G, MRT37}, NEFM (neurofilament medium chain) [NCBI Gene 4741] {aka NEF3, NF-M, NFM}, LARP4B (La ribonucleoprotein 4B) [NCBI Gene 23185] {aka KIAA0217, LARP5}, CNTNAP1 (contactin associated protein 1) [NCBI Gene 8506] {aka CASPR, CHN3, CNTNAP, NRXN4, P190}, SCN8A (sodium voltage-gated channel alpha subunit 8) [NCBI Gene 6334] {aka BFIS5, CERIII, CIAT, DEE13, EIEE13, MED}, FUS (FUS RNA binding protein) [NCBI Gene 2521] {aka ALS6, ETM4, FUS1, HNRNPP2, POMP75, TLS}, HDAC6 (histone deacetylase 6) [NCBI Gene 10013] {aka CPBHM, HD6, JM21, KDAC6, PPP1R90}, TUBA1A (tubulin alpha 1a) [NCBI Gene 7846] {aka B-ALPHA-1, LIS3, TUBA3}, TTLL7 (tubulin tyrosine ligase like 7) [NCBI Gene 79739], KCNJ10 (potassium inwardly rectifying channel subfamily J member 10) [NCBI Gene 3766] {aka BIRK-10, KCNJ13-PEN, KIR1.2, KIR4.1, SESAME}, PPARGC1A (PPARG coactivator 1 alpha) [NCBI Gene 10891] {aka LEM6, PGC-1(alpha), PGC-1alpha, PGC-1v, PGC1, PGC1A}, MALAT1 (metastasis associated lung adenocarcinoma transcript 1) [NCBI Gene 378938] {aka HCN, LINC00047, NCRNA00047, NEAT2, PRO2853, miPEP-52}, SCN2A (sodium voltage-gated channel alpha subunit 2) [NCBI Gene 6326] {aka BFIC3, BFIS3, BFNIS, DEE11, EA9, EIEE11}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, PIK3C2B (phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta) [NCBI Gene 5287] {aka C2-PI3K}, SPTBN4 (spectrin beta, non-erythrocytic 4) [NCBI Gene 57731] {aka CMND, NEDHND, QV, SPNB4, SPTBN3}, NUFIP2 (nuclear FMR1 interacting protein 2) [NCBI Gene 57532] {aka 182-FIP, 82-FIP, FIP-82, NUFP2, PIG1}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, PKM (pyruvate kinase M1/2) [NCBI Gene 5315] {aka CTHBP, HEL-S-30, OIP3, PK3, PKM2, TCB}, CAMK2G (calcium/calmodulin dependent protein kinase II gamma) [NCBI Gene 818] {aka CAMK, CAMK-II, CAMKG, MRD59}, RPS25 (ribosomal protein S25) [NCBI Gene 6230] {aka S25, eS25}, TUBA8 (tubulin alpha 8) [NCBI Gene 51807] {aka CDCBM8, MACTHC2, TUBAL2}, EEF2K (eukaryotic elongation factor 2 kinase) [NCBI Gene 29904] {aka CaMKIII, HSU93850, eEF-2K}, TIA1 (TIA1 cytotoxic granule associated RNA binding protein) [NCBI Gene 7072] {aka ALS26, TIA-1, WDM}, VAPB (VAMP associated protein B and C) [NCBI Gene 9217] {aka ALS8, VAMP-B, VAP-B}, ATXN2 (ataxin 2) [NCBI Gene 6311] {aka ATX2, SCA2, TNRC13}, LDHA (lactate dehydrogenase A) [NCBI Gene 3939] {aka GSD11, HEL-S-133P, LDHM, PIG19}, ITPR3 (inositol 1,4,5-trisphosphate receptor type 3) [NCBI Gene 3710] {aka CMT1J, IMD132, IMD133, IP3R, IP3R-3, IP3R3}, HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3) [NCBI Gene 220988] {aka 2610510D13Rik, D10S102, FBRNP, HNRPA3}, TUBB4B (tubulin beta 4B class IVb) [NCBI Gene 10383] {aka Beta2, LCAEOD, TUBB2, TUBB2C}, HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1) [NCBI Gene 3181] {aka HNRNPA2, HNRNPB1, HNRPA2, HNRPA2B1, HNRPB1, IBMPFD2}, SVBP (small vasohibin binding protein) [NCBI Gene 374969] {aka CCDC23, NEDAHM, SPG94}, NEFH (neurofilament heavy chain) [NCBI Gene 4744] {aka CMT2CC, NFH}
- **Diseases:** axonal injury (MESH:D001480), neuropathies (MESH:D009422), ischemic injury (MESH:D017202), demyelinating diseases (MESH:D003711), Axonal Autonomy (MESH:D012183), metabolic deficit (MESH:D009461), ischemia (MESH:D007511), swelling (MESH:D004487), channelopathies (MESH:D053447), transport failure (MESH:D051437), diabetic (MESH:D003920), mitochondrial dysfunction (MESH:D028361), injury to (MESH:D014947)
- **Chemicals:** glucose (MESH:D005947), FADH2 (MESH:C058805), calcium (MESH:D002118), sphingolipids (MESH:D013107), NAD+ (MESH:D009243), Lipid (MESH:D008055), ATP (MESH:D000255), N6-methyladenine (MESH:C005955), cerebroside (MESH:D002554), FAD (MESH:D005182), K (MESH:D011188), Na+ (MESH:D012964), Ca2+ (-), cholesterol (MESH:D002784), ketone bodies (MESH:D007657), phosphatidic acid (MESH:D010712), ADP (MESH:D000244), lactate (MESH:D019344), PIP2 (MESH:D019269), pyruvate (MESH:D019289)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940890/full.md

## References

199 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940890/full.md

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Source: https://tomesphere.com/paper/PMC12940890