# G-Quadruplex Unwinding Molecular Mechanisms by Helicases and Their Applications

**Authors:** Jiawen Sun, Yangzhi Wang, Yihua Huang, Zhongzhou Chen

PMC · DOI: 10.3390/ijms27041629 · International Journal of Molecular Sciences · 2026-02-07

## TL;DR

This paper reviews how helicases unwind G-quadruplex structures in DNA and explores their roles in genome stability and potential applications in sequencing.

## Contribution

The paper provides a comprehensive review of recent structural insights into G4 unwinding by helicases and their therapeutic and sequencing applications.

## Key findings

- G-quadruplexes are stable structures that can impede DNA/RNA processes and are linked to cancer biology.
- Helicases actively resolve G4 structures, maintaining genomic stability and enabling replication and transcription.
- Structural insights from protein crystallography inform the design of G4-targeting therapeutics and sequencing technologies.

## Abstract

G-quadruplexes (G4s) are specialized nucleic acid structures extensively formed throughout the genome, with particular enrichment in regulatory regions such as telomeres, promoters, and transcriptional enhancers. These four-stranded assemblies are involved in multiple chromosomal processes, including DNA replication, transcription, maintenance of genomic stability, and epigenetic regulation, and are closely associated with cancer biology. Due to their unusual thermodynamic stability, G4s serve as physical barriers to DNA/RNA unwinding, thereby impeding replication, transcription, and translation and compromising genome integrity. To mitigate this threat, cells have evolved dedicated helicases that can actively resolve G4 structures. In this review, we summarize recent structural advances—primarily derived from protein crystallography—regarding the mechanisms by which helicases unwind G4 quadruplexes. The insights presented herein establish a framework for elucidating the molecular basis of G4 unfolding and for the rational design of small-molecule G4 ligands and therapeutic agents. Additionally, we explore the applications of G4 helicases in nanopore sequencing, which aim to enhance sequencing accuracy, throughput, and continuity.

## Linked entities

- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815] {aka C-Kit, CD117, MASTC, PBT, SCFR}, RTEL1 (regulator of telomere elongation helicase 1) [NCBI Gene 51750] {aka C20orf41, DKCA4, DKCB5, NHL, PFBMFT3, RTEL}, WRN (WRN RecQ like helicase) [NCBI Gene 7486] {aka RECQ3, RECQL2, RECQL3}, WRN (WRN RecQ like helicase) [NCBI Gene 505061], PYCARD (PYD and CARD domain containing) [NCBI Gene 29108] {aka ASC, CARD5, TMS, TMS-1, TMS1}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, ATF4 (activating transcription factor 4) [NCBI Gene 468] {aka CREB-2, CREB2, TAXREB67, TXREB}, CHL1 (cell adhesion molecule L1 like) [NCBI Gene 504415], TRA (T cell receptor alpha locus) [NCBI Gene 6955] {aka IMD7, TCRA, TRA@}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, PIF1 (DNA helicase PIF1) [NCBI Gene 854941] {aka TST1}, ENY2 (ENY2 transcription and export complex 2 subunit) [NCBI Gene 56943] {aka DC6, Sus1, e(y)2}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, DHX36 (DEAH-box helicase 36) [NCBI Gene 509583] {aka G4R1}, MSH6 (mutS homolog 6) [NCBI Gene 2956] {aka GTBP, GTMBP, HNPCC5, HSAP, LYNCH5, MMRCS3}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, HELQ (helicase, POLQ like) [NCBI Gene 113510] {aka HEL308}, BRCA2 (BRCA2 DNA repair associated) [NCBI Gene 675] {aka BRCC2, BROVCA2, FACD, FAD, FAD1, FANCD}, EIF4A2 (eukaryotic translation initiation factor 4A2) [NCBI Gene 1974] {aka BM-010, DDX2B, EIF4A, EIF4F, NEDHSS, eIF-4A-II}, DHX36 (DEAH-box helicase 36) [NCBI Gene 170506] {aka DDX36, G4R1, MLEL1, RHAU}, RAD51 (RAD51 recombinase) [NCBI Gene 5888] {aka BRCC5, FANCR, HRAD51, HsRad51, HsT16930, MRMV2}, RPA1 (replication protein A1) [NCBI Gene 6117] {aka HSSB, MST075, PFBMFT6, REPA1, RF-A, RP-A}, MMUT (methylmalonyl-CoA mutase) [NCBI Gene 4594] {aka MCM, MUT}, BLM (BLM RecQ like helicase) [NCBI Gene 534148], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, PIF1 (PIF1 5'-to-3' DNA helicase) [NCBI Gene 534330], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 511077] {aka CMYC}, ERCC2 (ERCC excision repair 2, TFIIH core complex helicase subunit) [NCBI Gene 2068] {aka COFS2, CXPD, EM9, TFIIH, TTD, TTD1}, CDC45 (cell division cycle 45) [NCBI Gene 8318] {aka CDC45L, CDC45L2, MGORS7, PORC-PI-1}, MLH1 (mutL homolog 1) [NCBI Gene 4292] {aka COCA2, FCC2, HNPCC, HNPCC2, LYNCH2, MLH-1}, MSH2 (mutS homolog 2) [NCBI Gene 4436] {aka COCA1, FCC1, HNPCC, HNPCC1, LCFS2, LYNCH1}, RTEL1 (regulator of telomere elongation helicase 1) [NCBI Gene 505721] {aka RTEL}, DGAT2L6 (diacylglycerol O-acyltransferase 2 like 6) [NCBI Gene 347516] {aka DC3}, TSLIG1 (tRNA splicing ligase complex subunit 1) [NCBI Gene 339487] {aka ARCH, ARCH2, ZBTB8OS}
- **Diseases:** toxicities (MESH:D064420), breast-cancer (MESH:D001943), cancer (MESH:D009369), injury to (MESH:D014947)
- **Chemicals:** G4 (MESH:D004003), Imetelstat (MESH:C519562), 4Fe-4S (-), Na+ (MESH:D012964), K (MESH:D011188), oligosaccharide (MESH:D009844), hydrogen (MESH:D006859), coptisine (MESH:C034384), berberine (MESH:D001599), flavonoids (MESH:D005419), ATP (MESH:D000255), nitrogen (MESH:D009584), CX-5461 (MESH:C557717), guanine (MESH:D006147), Carbon (MESH:D002244), RHPS4 (MESH:C438609), metal (MESH:D008670), zinc (MESH:D015032), oxygen (MESH:D010100), sugar (MESH:D000073893), salt (MESH:D012492), -phosphate (MESH:D010710), alkaloids (MESH:D000470), oligonucleotide (MESH:D009841), BRACO19 (MESH:C454064), PDS (MESH:D010165), Fe-S (MESH:D007501), nucleotide (MESH:D009711)
- **Species:** Homo sapiens (human, species) [taxon 9606], Thermus oshimai (species) [taxon 56957], Drosophila melanogaster (fruit fly, species) [taxon 7227], Bos taurus (bovine, species) [taxon 9913], Mus musculus (house mouse, species) [taxon 10090], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Escherichia coli (E. coli, species) [taxon 562], Severe acute respiratory syndrome-related coronavirus (no rank) [taxon 694009]

## Full text

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## Figures

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## References

113 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940805/full.md

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Source: https://tomesphere.com/paper/PMC12940805