# An Exploratory Biomarker Study of First-Trimester Circulating miRNAs Associated with Later Gestational Diabetes Mellitus

**Authors:** Miguel Angel Déctor, Valeria Carmen Macías-González, Adriana Sánchez-García, Armando Hernández-Mendoza, Natalia Martínez-Acuña, Ana María Rivas-Estilla, José Gerardo González-González, María Carmen Barboza-Cerda

PMC · DOI: 10.3390/ijms27041920 · International Journal of Molecular Sciences · 2026-02-17

## TL;DR

This study identifies early pregnancy microRNAs linked to later gestational diabetes, offering potential biomarkers for early detection.

## Contribution

The study presents a novel set of first-trimester circulating miRNAs associated with later GDM, using an unbiased sequencing approach.

## Key findings

- Eighteen miRNAs were prioritized from 255 detected species, linked to metabolic pathways like Ca2+ homeostasis and insulin signaling.
- Key miRNAs such as miR-29a-3p and miR-146a-5p were connected to metabolic regulators like PTEN and AKT1 through in silico analysis.
- The identified miRNAs are proposed as biomarkers for early metabolic states rather than direct causal factors in GDM.

## Abstract

Gestational diabetes mellitus (GDM) develops silently during early pregnancy, yet its earliest circulating molecular signatures remain poorly defined. In this exploratory biomarker study, we characterized first-trimester circulating microRNA (miRNAs) associated with later GDM using a pool-based small RNA sequencing approach. Using a systematic and unbiased sequencing strategy with locus-level miRNA resolution, we profiled the first-trimester plasma miRNome and prioritized a set of 18 mature miRNAs from among 255 detected species. Set-level functional enrichment analyses based on curated and predicted miRNA–target interactions derived primarily from cellular and tissue-based studies showed annotation-based convergence on pathways related to Ca2+ homeostasis, glucagon–insulin regulatory circuits, and PI3K–AKT signaling. Network analysis indicated coordinated associations among these miRNAs and shared target pathways involved in insulin secretion and insulin sensitivity. Key contributors—including miR-29a-3p, miR-29c-3p, miR-146a-5p, let-7a-5p, and miR-182-5p—were linked, through in silico target annotation, to central metabolic regulators such as PTEN, PIK3R1, AKT1, AKT2, and components of Ca2+ signaling (ATP2A2, CALM1/3, ITPR1, RYR2). These circulating miRNAs should be interpreted primarily as biomarkers reflecting coordinated metabolic states rather than as direct causal mediators. Most identified miRNAs have not been previously reported in the context of first-trimester GDM, supporting the exploratory and hypothesis-generating nature of this circulating miRNA signature in early gestational metabolic research.

## Linked entities

- **Genes:** PTEN (phosphatase and tensin homolog) [NCBI Gene 5728], PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 5295], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207], AKT2 (AKT serine/threonine kinase 2) [NCBI Gene 208], ATP2A2 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2) [NCBI Gene 488], CALM1 (calmodulin 1) [NCBI Gene 801], CALM3 (calmodulin 3) [NCBI Gene 808], ITPR1 (inositol 1,4,5-trisphosphate receptor type 1) [NCBI Gene 3708], RYR2 (ryanodine receptor 2) [NCBI Gene 6262]
- **Diseases:** Gestational diabetes mellitus (MONDO:0005406)

## Full-text entities

- **Genes:** MIR132 (microRNA 132) [NCBI Gene 406921] {aka MIRN132, miRNA132, mir-132}, ITPR1 (inositol 1,4,5-trisphosphate receptor type 1) [NCBI Gene 3708] {aka ACV, CLA4, INSP3R1, IP3R, IP3R1, PPP1R94}, MIR1915 (microRNA 1915) [NCBI Gene 100302129] {aka MIRN1915, hsa-mir-1915}, PCK1 (phosphoenolpyruvate carboxykinase 1) [NCBI Gene 5105] {aka PCKDC, PEPCK-C, PEPCK1, PEPCKC}, MIR6859-1 (microRNA 6859-1) [NCBI Gene 102466751] {aka hsa-mir-6859-1}, CALM1 (calmodulin 1) [NCBI Gene 801] {aka CALML2, CAM2, CAM3, CAMB, CAMC, CAMI}, MIR146A (microRNA 146a) [NCBI Gene 406938] {aka MIRN146, MIRN146A, miR-146a, miRNA146A}, MIR29A (microRNA 29a) [NCBI Gene 407021] {aka MIRN29, MIRN29A, hsa-mir-29, hsa-mir-29a, miRNA29A, mir-29a}, IRS1 (insulin receptor substrate 1) [NCBI Gene 3667] {aka HIRS-1}, MIR16-1 (microRNA 16-1) [NCBI Gene 406950] {aka MIRN16-1, miRNA16-1, mir-16-1}, MIR17 (microRNA 17) [NCBI Gene 406952] {aka MIR17-5p, MIR91, MIRN17, MIRN91, hsa-mir-17, miR-17}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026] {aka CAP20, CDKN1, CIP1, MDA-6, P21, SDI1}, MIR221 (microRNA 221) [NCBI Gene 407006] {aka MIRN221, miRNA221, mir-221}, MIRLET7A1 (microRNA let-7a-1) [NCBI Gene 406881] {aka LET7A1, MIRNLET7A1, let-7a-1}, MIR432 (microRNA 432) [NCBI Gene 574451] {aka MIRN432, hsa-mir-432, mir-432}, MIR99B (microRNA 99b) [NCBI Gene 407056] {aka MIRN99B, mir-99b}, MIR15B (microRNA 15b) [NCBI Gene 406949] {aka MIRN15B, hsa-mir-15b, miR-15b}, MIR1825 (microRNA 1825) [NCBI Gene 100302183] {aka MIRN1825, hsa-mir-1825}, MIR155 (microRNA 155) [NCBI Gene 406947] {aka MIRN155, miRNA155, mir-155}, MIR935 (microRNA 935) [NCBI Gene 100126325] {aka MIRN935, hsa-mir-935, mir-935}, TBC1D1 (TBC1 domain family member 1) [NCBI Gene 23216] {aka TBC, TBC1}, MIR148A (microRNA 148a) [NCBI Gene 406940] {aka MIRN148, MIRN148A, hsa-mir-148, mir-148a}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, MIR150 (microRNA 150) [NCBI Gene 406942] {aka MIRN150, miRNA150, mir-150}, MIR19B1 (microRNA 19b-1) [NCBI Gene 406980] {aka C13orf25, MIR19B, MIRH1, MIRHG1, MIRN19B1, miR-19b-1}, MIR421 (microRNA 421) [NCBI Gene 693122] {aka MIRN421, hsa-mir-421}, MIR192 (microRNA 192) [NCBI Gene 406967] {aka MIRN192, miR-192, miRNA192}, G6PC1 (glucose-6-phosphatase catalytic subunit 1) [NCBI Gene 2538] {aka G6PC, G6PT, G6Pase, GSD1, GSD1a}, MIR128-2 (microRNA 128-2) [NCBI Gene 406916] {aka MIR128B, MIRN128-2, MIRN128B, mir-128-2, mir-128b}, MIR425 (microRNA 425) [NCBI Gene 494337] {aka MIRN425, hsa-mir-425, mir-425}, PHLPP2 (PH domain and leucine rich repeat protein phosphatase 2) [NCBI Gene 23035] {aka PHLPPL, PPM3B}, MIR451B (microRNA 451b) [NCBI Gene 100616273], CCND2 (cyclin D2) [NCBI Gene 894] {aka KIAK0002, MPPH3}, ITGB1 (integrin subunit beta 1) [NCBI Gene 3688] {aka CD29, FNRB, GPIIA, MDF2, MSK12, VLA-BETA}, MIR200C (microRNA 200c) [NCBI Gene 406985] {aka MIRN200C, mir-200c}, MIR29C (microRNA 29c) [NCBI Gene 407026] {aka MIRN29C, miRNA29C, mir-29c}, SLC2A4 (solute carrier family 2 member 4) [NCBI Gene 6517] {aka GLUT4}, AKT2 (AKT serine/threonine kinase 2) [NCBI Gene 208] {aka HIHGHH, PKBB, PKBBETA, PRKBB, RAC-BETA}, MIRLET7A2 (microRNA let-7a-2) [NCBI Gene 406882] {aka LET7A2, MIRNLET7A2, let-7a-2}, MIR92A2 (microRNA 92a-2) [NCBI Gene 407049] {aka MIRN92-2, MIRN92A-2, MIRN92A2, mir-92a-2}, MIR4433A (microRNA 4433a) [NCBI Gene 100616265] {aka MIR4433, hsa-mir-4433a}, DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}, MIR181A1 (microRNA 181a-1) [NCBI Gene 406995] {aka MIR213, MIRN181A1, MIRN213, hsa-mir-181a-1, mir-181a-1, mir-213}, GCG (glucagon) [NCBI Gene 2641] {aka GLP-1, GLP1, GLP2, GRPP}, MIR29B1 (microRNA 29b-1) [NCBI Gene 407024] {aka MIRN29B1, miR-29b, miRNA29B1, mir-29b-1}, SYT1 (synaptotagmin 1) [NCBI Gene 6857] {aka BAGOS, P65, SVP65, SYT}, KLF4 (KLF transcription factor 4) [NCBI Gene 9314] {aka EZF, GKLF}, MIR23A (microRNA 23a) [NCBI Gene 407010] {aka MIRN23A, hsa-mir-23a, miRNA23A, mir-23a}, MIR222 (microRNA 222) [NCBI Gene 407007] {aka MIRN222, miRNA222, mir-222}, MIR16-2 (microRNA 16-2) [NCBI Gene 406951] {aka MIRN16-2, mir-16-2, mir-16-3}, FOXO1 (forkhead box O1) [NCBI Gene 2308] {aka FKH1, FKHR, FOXO1A}, CALM3 (calmodulin 3) [NCBI Gene 808] {aka CALM, CAM1, CAM2, CAMB, CPVT6, CaM}, PDK4 (pyruvate dehydrogenase kinase 4) [NCBI Gene 5166], INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, MIR34A (microRNA 34a) [NCBI Gene 407040] {aka MIRN34A, miRNA34A, mir-34, mir-34a}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, MIR125B1 (microRNA 125b-1) [NCBI Gene 406911] {aka MIRN125B1, mir-125b-1}, MIRLET7F1 (microRNA let-7f-1) [NCBI Gene 406888] {aka LET7F1, MIRNLET7F1, let-7f-1}
- **Diseases:** hemolysis (MESH:D006461), overweight (MESH:D050177), Type 1 diabetes (MESH:D003922), obesity (MESH:D009765), TAM (MESH:D020914), GDM (MESH:D016640), Type 2 diabetes (MESH:D003924), impaired glucose homeostasis (MESH:D044882), insulin resistance (MESH:D007333), prediabetes (MESH:D011236), preeclampsia (MESH:D011225), macrosomia (MESH:D005320), cancer (MESH:D009369), Diabetes mellitus (MESH:D003920), preterm birth (MESH:D047928), impaired (MESH:D060825), polycystic ovary syndrome (MESH:D011085), hypertensive disorders (MESH:D006973), metabolic disturbances (MESH:D024821), inflammatory (MESH:D007249), injury to (MESH:D014947)
- **Chemicals:** glucose (MESH:D005947), ethanol (MESH:D000431), chloroform (MESH:D002725), SYBR Green (MESH:C098022), phenol (MESH:D019800), water (MESH:D014867), polyacrylamide (MESH:C016679), n (MESH:D009584), TAM (MESH:D013629), salts (MESH:D012492), Ca2+ (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

33 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940769/full.md

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Source: https://tomesphere.com/paper/PMC12940769