# Antisense Dipeptide Repeat Proteins Drive Widescale Purine Metabolism Aberration in C9orf72 Amyotrophic Lateral Sclerosis via ADA

**Authors:** Benjamin Hall, Lydia Castelli, Adrian Higginbottom, Jingxuan He, Ling-Nan Zou, Heather Walker, Miriam Yagüe-Capilla, Kari E. Wong, David J. Burrows, Jonathan George, Keaton Hamer, Jenny M. Tanner, Ergita Kyrgiou-Balli, Rees Ross, Herbie Garland, Erin Tonkiss, Rachel George, Christopher P. Webster, Emma F. Smith, Hannah O. Timmons, Jess Allsop, Nikolas Stefanidis, Billie D. Ward, Ya-Hui Lin, J. Robin Highley, Mimoun Azzouz, Ryan J. H. West, Sean G. Rudd, Kurt J. De Vos, Pamela J. Shaw, Guillaume M. Hautbergue, Scott P. Allen

PMC · DOI: 10.3390/ijms27041953 · International Journal of Molecular Sciences · 2026-02-18

## TL;DR

This study shows that dipeptide repeat proteins in C9orf72 ALS disrupt purine metabolism, contributing to disease progression.

## Contribution

The study identifies a novel mechanism by which DPRs impair purine metabolism through ADA loss in C9orf72 ALS.

## Key findings

- Loss of ADA and altered nucleotidase activity disrupts purine dNTP levels in C9-ALS astrocytes.
- Purine metabolism dysfunction is observed in patient CSF and white matter.
- Reducing DPR levels restores ADA activity in C9-ALS models.

## Abstract

Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease characterised by the death of motor neurons leading to paralysis and death, generally 3–5 years post-symptom onset. The most frequent genetic cause of ALS is a hexanucleotide repeat expansion (HRE) in the chromosome 9 open reading frame 72 (C9orf72) gene, that has three major hypothesised pathological mechanisms including the production of dipeptide repeat proteins (DPRs). Our laboratory has previously identified purine metabolism dysfunction in induced neural progenitor cell-derived astrocytes (iAstrocytes) from C9orf72 ALS (C9-ALS) cases (C9-iAstrocytes), driven by loss of the enzyme adenosine deaminase (ADA). Here, we have demonstrated that loss of ADA along with changes to ecto-5′-nucleotidase and hypoxanthine-guanine phosphoribosyl transferase led to disruption in purine metabolite levels including purine dNTP output. These changes were recapitulated in patient CSF, whilst loss of ADA was recapitulated in patient white matter. Immunofluorescence also demonstrated purinosome formation dysfunction in C9-iAstrocytes. These changes are likely driven by DPRs as ADA loss was recapitulated in in vitro and in vivo DPR models. Finally, ADA levels could be recovered by reducing DPR levels either by inhibiting serine/arginine-rich splicing factor 1 or overexpressing RuvB-like 2. Our data demonstrate that DPR production negatively affects purine function in C9-ALS suggesting a potentially pivotal role for purine metabolism dysfunction in C9-ALS pathology.

## Linked entities

- **Genes:** C9orf72 (C9orf72-SMCR8 complex subunit) [NCBI Gene 203228], ADA (adenosine deaminase) [NCBI Gene 100], HGPT (Hypoxanthine-guanine phosphoribosyltransferase) [NCBI Gene 843505]

## Full-text entities

- **Genes:** MRAP (melanocortin 2 receptor accessory protein) [NCBI Gene 56246] {aka B27, C21orf61, FALP, GCCD2, MRAP1}, Gdnf (glial cell line derived neurotrophic factor) [NCBI Gene 14573] {aka ATF}, Nr3c1 (nuclear receptor subfamily 3, group C, member 1) [NCBI Gene 14815] {aka GR, Grl-1, Grl1}, SLC1A2 (solute carrier family 1 member 2) [NCBI Gene 6506] {aka DEE41, EAAT2, EIEE41, GLT-1, GLT1, HBGT}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, PPAT (phosphoribosyl pyrophosphate amidotransferase) [NCBI Gene 5471] {aka ATASE, GPAT, PRAT}, ULK1 (unc-51 like autophagy activating kinase 1) [NCBI Gene 8408] {aka ATG1, ATG1A, UNC51, Unc51.1, hATG1}, FGF2 (fibroblast growth factor 2) [NCBI Gene 2247] {aka BFGF, FGF-2, FGFB, HBGF-2}, Ada (Adenosine deaminase) [NCBI Gene 41092] {aka CG11994, DmADA, Dmel\CG11994, DrosADA, dADA}, GDNF (glial cell derived neurotrophic factor) [NCBI Gene 386587], TAF8 (TATA-box binding protein associated factor 8) [NCBI Gene 129685] {aka II, NEDMLHB, TAF, TAF(II)43, TAFII-43, TAFII43}, HPRT1 (hypoxanthine phosphoribosyltransferase 1) [NCBI Gene 3251] {aka HGPRT, HPRT}, Ada (adenosine deaminase) [NCBI Gene 11486], ADSL (adenylosuccinate lyase) [NCBI Gene 158] {aka AMPS, ASASE, ASL}, PAICS (phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase) [NCBI Gene 10606] {aka ADE2, ADE2H1, AIRC, PAICSD, PAIS}, SMCR8 (SMCR8-C9orf72 complex subunit) [NCBI Gene 140775] {aka DENND8A}, RUVBL2 (RuvB like AAA ATPase 2) [NCBI Gene 10856] {aka CGI-46, ECP-51, ECP51, INO80J, REPTIN, RVB2}, HK1 (hexokinase 1) [NCBI Gene 3098] {aka CNSHA5, HK, HK1-ta, HK1-tb, HK1-tc, HKD}, SRSF1 (serine and arginine rich splicing factor 1) [NCBI Gene 6426] {aka ASF, NEDFBA, SF2, SF2p33, SFRS1, SRp30a}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, ATIC (5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase) [NCBI Gene 471] {aka AICAR, AICARFT, HEL-S-70p, IMPCHASE, PURH}, PNP (purine nucleoside phosphorylase) [NCBI Gene 4860] {aka NP, PRO1837, PUNP}, NT5E (5'-nucleotidase ecto) [NCBI Gene 4907] {aka CALJA, CD73, E5NT, NT, NT5, NTE}, Ruvbl2 (RuvB-like AAA ATPase 2) [NCBI Gene 20174] {aka mp47, p47}, C9orf72 (C9orf72-SMCR8 complex subunit) [NCBI Gene 203228] {aka ALSFTD, DENND9, DENNL72, FTDALS, FTDALS1}, Smn (survival motor neuron) [NCBI Gene 39844] {aka CG16725, DmSMN, Dmel\CG16725, dSMN, dSmn, l(3)73Ao}, Jra (Jun-related antigen) [NCBI Gene 36057] {aka AP-1, AP1, Ap-1, Ap1, CG2275, D-Jun}, GDNF (glial cell derived neurotrophic factor) [NCBI Gene 2668] {aka ATF, ATF1, ATF2, HFB1-GDNF, HSCR3}, ADK (adenosine kinase) [NCBI Gene 132] {aka AK}, ADA (adenosine deaminase) [NCBI Gene 100] {aka ADA1}, RAB1A (RAB1A, member RAS oncogene family) [NCBI Gene 5861] {aka RAB1, YPT1}, ADA (adenosine deaminase) [NCBI Gene 280712], GART (phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase) [NCBI Gene 2618] {aka AIRS, GARS, GARTF, PAIS, PGFT, PRGS}, Srsf1 (serine and arginine-rich splicing factor 1) [NCBI Gene 110809] {aka 1110054N12Rik, 5730507C05Rik, 6330415C05Rik, Asf, Sf2, Sfrs1}, TBC1D1 (TBC1 domain family member 1) [NCBI Gene 23216] {aka TBC, TBC1}, TIMMDC1 (translocase of inner mitochondrial membrane domain containing 1) [NCBI Gene 51300] {aka C3orf1, MC1DN31}, PFAS (phosphoribosylformylglycinamidine synthase) [NCBI Gene 5198] {aka FGAMS, FGAR-AT, FGARAT, GATD8, PURL}, SURF6 (surfeit 6) [NCBI Gene 6838] {aka RRP14}, dpr1 (defective proboscis extension response 1) [NCBI Gene 2768858] {aka CG13439, Dmel\CG13439, Dpr-1, dpr}
- **Diseases:** extracellular vesicle dysfunction (MESH:C535509), toxicity (MESH:D064420), mitochondrial and glycolytic deficiencies (MESH:D028361), deficient (MESH:D007153), death (MESH:D003643), Split-TurboID (MESH:D010146), ALS (MESH:D000690), neurodegenerative disease (MESH:D019636), injury to (MESH:D014947), SCID (MESH:D016511), LLPS (MESH:D000210), neurological impairment (MESH:D009422), bulbar and cognitive deficit (MESH:D003072), metabolism (MESH:D008659), paralysis (MESH:D010243), hypoxic (MESH:D002534), respiratory failure (MESH:D012131)
- **Chemicals:** dATP (MESH:C026600), deoxyinosine (MESH:C012271), pentose phosphate (MESH:D010428), carbon (MESH:D002244), rapamycin (MESH:D020123), agar (MESH:D000362), dGTP (MESH:C029603), ADP (MESH:D000244), Triton X-100 (MESH:D017830), acetonitrile (MESH:C032159), azide (MESH:D001386), N-2 (MESH:D009584), IMP (MESH:D007291), Urate (MESH:D014527), EDTA (MESH:D004492), methylxanthine (MESH:C008514), Hypoxanthine (MESH:D019271), HEPES (MESH:D006531), CuSO4 (MESH:D019327), caffeine (MESH:D002110), glycerol (MESH:D005990), puromycin (MESH:D011691), xanthosine (MESH:C005893), formic acid (MESH:C030544), NaCl (MESH:D012965), guanosine monophosphate (MESH:D006157), methanol (MESH:D000432), Adenosine (MESH:D000241), Inosine (MESH:D007288), pyruvate (MESH:D019289), MgCl2 (MESH:D015636), DPRs (-), alkyne (MESH:D000480), FCCP (MESH:D002259), NaOH (MESH:D012972), oligomycin (MESH:D009840), DAPI (MESH:C007293), ethanol (MESH:D000431), xanthine (MESH:D019820), glucose (MESH:D005947), glutamate (MESH:D018698), CHX (MESH:D003513), isopropanol (MESH:D019840), SDS (MESH:D012967), ascorbate (MESH:D001205), oligonucleotide (MESH:D009841), calcium chloride (MESH:D002122), Laemmli buffer (MESH:C088816), DTT (MESH:D004229), -GA (MESH:D005708), PBS (MESH:D007854), Biotin (MESH:D001710), KCl (MESH:D011189), TBS (MESH:D013725), deoxyadenosine (MESH:C058118), agarose (MESH:D012685), CAIR (MESH:C011416), ribose-1-phosphate (MESH:C031154), Methyl paraben (MESH:C015358), propionic acid (MESH:C029658)
- **Species:** Homo sapiens (human, species) [taxon 9606], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Mus musculus (house mouse, species) [taxon 10090], Drosophila melanogaster (fruit fly, species) [taxon 7227]
- **Mutations:** C in 0, glycine-proline, Proline-Arginine, D10A, tryptophan-aspartic acid, glycine-arginine, proline-alanine, Y374X, Gly-Ala
- **Cell lines:** FLAG — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_C0IU), N2a — Mus musculus (Mouse), Mouse neuroblastoma, Cancer cell line (CVCL_0470), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), HEK293T/17 — Homo sapiens (Human), Transformed cell line (CVCL_1926)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12940700/full.md

## References

122 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940700/full.md

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Source: https://tomesphere.com/paper/PMC12940700