# The Mystery of the Hidden Trace: Emerging Genetic Approaches to Improve Body Fluid Identification

**Authors:** Dana Macfarlane, Gabriela Roca, Christian Stadler, Sara C. Zapico

PMC · DOI: 10.3390/genes17020146 · Genes · 2026-01-28

## TL;DR

This paper explores new genetic methods to improve the identification of body fluids at crime scenes, addressing current limitations in accuracy and variety.

## Contribution

The paper highlights emerging molecular approaches like mRNA, microRNA, and epigenetics for more accurate and expanded body fluid identification.

## Key findings

- Current methods for body fluid identification have limitations in specificity, sensitivity, and handling mixtures or degraded samples.
- Emerging molecular techniques offer potential for identifying a wider range of fluids and providing additional donor information through SNP analysis.

## Abstract

Body fluid identification at crime scenes is the first step in the forensic biology workflow, leading to the identification of the perpetrator and/or, in some cases, the victim. Current methods that are regularly used in forensic criminal evidence analysis utilize well-studied properties of each fluid as the foundation of the protocol. Among these approaches, alternative light sources, chemical reactions, lateral flow immunochromatographic tests, and microscopic detection stand out to identify the main body fluids encountered at crime scenes: blood, semen, and saliva. However, these often come with limits for specificity and sensitivity. There is also difficulty with fluid mixtures, environmental degradation, and destruction of the sample by the method used. Other fluids, like vaginal fluid and fecal matter, lack standardized protocols and require innovative ideas for accurate analysis without compromising the sample. Emerging technologies based on molecular methods have been the focus of body fluid research, with emphasis on topics such as mRNA, microRNA, epigenetics, and microbial analysis. Additional information alongside the determination of fluid origin could be an advantage from new molecular techniques, such as the identification of donors from SNP analysis, if regular STR analysis is not possible. Validation studies and the integration of such research have the potential to expand and enhance the laboratory practices of forensic science. This article will provide an overview of the current methods applied in the crime lab for body fluid identification before exploring active research in this field, pointing out the potential of these techniques for application in forensic cases to overcome present issues and expand the variety of body fluids identified.

## Full-text entities

- **Genes:** LCE1C (late cornified envelope 1C) [NCBI Gene 353133] {aka LEP3}, COL6A3 (collagen type VI alpha 3 chain) [NCBI Gene 1293] {aka BTHLM1, BTHLM1C, DYT27, UCMD1, UCMD1C}, MYOZ1 (myozenin 1) [NCBI Gene 58529] {aka CS-2, FATZ, MYOZ}, PRM2 (protamine 2) [NCBI Gene 5620] {aka CT94.2}, LEFTY2 (left-right determination factor 2) [NCBI Gene 7044] {aka EBAF, LEFTA, LEFTYA, TGFB4}, MUC7 (mucin 7, secreted) [NCBI Gene 4589] {aka MG2}, RSPO1 (R-spondin 1) [NCBI Gene 284654] {aka CRISTIN3, RSPO}, SERPINA12 (serpin family A member 12) [NCBI Gene 145264] {aka OL-64}, MIR484 (microRNA 484) [NCBI Gene 619553] {aka MIRN484, hsa-mir-484, mir-484}, MEP1A (meprin A subunit alpha) [NCBI Gene 4224] {aka PPHA}, FLG2 (filaggrin 2) [NCBI Gene 388698] {aka IFPS, PSS6}, SEMG2 (semenogelin 2) [NCBI Gene 6407] {aka SGII}, MIR451A (microRNA 451a) [NCBI Gene 574411] {aka MIR451, MIRN451, hsa-mir-451, hsa-mir-451a, mir-451a}, TGM4 (transglutaminase 4) [NCBI Gene 7047] {aka TGP, hTGP}, KPLCE (KPRP N-terminal and LCE C-terminal like protein) [NCBI Gene 100129271] {aka C1orf68, LEP7, XP32}, KLK2 (kallikrein related peptidase 2) [NCBI Gene 3817] {aka KLK2A2, hGK-1, hK2}, MIR3139 (microRNA 3139) [NCBI Gene 100423017], MMP3 (matrix metallopeptidase 3) [NCBI Gene 4314] {aka CHDS6, MMP-3, SL-1, STMY, STMY1, STR1}, FUT6 (fucosyltransferase 6) [NCBI Gene 2528] {aka FCT3A, FT1A, Fuc-TVI, FucT-VI}, MIR320A (microRNA 320a) [NCBI Gene 407037] {aka MIRN320, MIRN320A, hsa-mir-320a, mir-320a}, PHGR1 (proline, histidine and glycine rich 1) [NCBI Gene 644844], MIR1260B (microRNA 1260b) [NCBI Gene 100422991] {aka mir-1260b}, PAEP (progestagen associated endometrial protein) [NCBI Gene 5047] {aka GD, GdA, GdF, GdS, PAEG, PEP}, PRB4 (proline rich protein BstNI subfamily 4) [NCBI Gene 5545] {aka Po}, SLC4A1 (solute carrier family 4 member 1 (Diego blood group)) [NCBI Gene 6521] {aka AE1, BND3, CD233, CHC, DI, EMPB3}, MIR1915 (microRNA 1915) [NCBI Gene 100302129] {aka MIRN1915, hsa-mir-1915}, CENPV (centromere protein V) [NCBI Gene 201161] {aka 3110013H01Rik, CENP-V, PRR6, p30}, MIR124-3 (microRNA 124-3) [NCBI Gene 406909] {aka MIRN124-3, MIRN124A3, mir-124-3}, CYP2A6 (cytochrome P450 family 2 subfamily A member 6) [NCBI Gene 1548] {aka CPA6, CYP2A, CYP2A3, CYPIIA6, P450C2A, P450PB}, HBB (hemoglobin subunit beta) [NCBI Gene 3043] {aka CD113t-C, ECYT6, beta-globin}, SPINK5 (serine peptidase inhibitor Kazal type 5) [NCBI Gene 11005] {aka LEKTI, LETKI, NETS, NS, VAKTI}, MIR182 (microRNA 182) [NCBI Gene 406958] {aka MIRN182, miRNA182, mir-182}, SORD (sorbitol dehydrogenase) [NCBI Gene 6652] {aka HEL-S-95n, HMNR8, RDH, SDH, SORD1, SORDD}, TNP1 (transition protein 1) [NCBI Gene 7141] {aka TP1}, HBD (hemoglobin subunit delta) [NCBI Gene 3045] {aka HBK}, CCL27 (C-C motif chemokine ligand 27) [NCBI Gene 10850] {aka ALP, CTACK, CTAK, ESKINE, ILC, PESKY}, ALAS2 (5'-aminolevulinate synthase 2) [NCBI Gene 212] {aka ALAS-E, ALASE, ANH1, ASB, SIDBA1, XLDPP}, KRT77 (keratin 77) [NCBI Gene 374454] {aka K1B, KRT1B}, GPAT3 (glycerol-3-phosphate acyltransferase 3) [NCBI Gene 84803] {aka AGPAT 10, AGPAT10, AGPAT8, AGPAT9, HMFN0839, LPAAT-theta}, BPIFA1 (BPI fold containing family A member 1) [NCBI Gene 51297] {aka LUNX, NASG, PLUNC, SPLUNC1, SPURT, bA49G10.5}, STATH (statherin) [NCBI Gene 6779] {aka STR}, PRR4 (proline rich 4) [NCBI Gene 11272] {aka LPRP, PROL4}, CDX1 (caudal type homeobox 1) [NCBI Gene 1044], PRM1 (protamine 1) [NCBI Gene 5619] {aka CT94.1, P1}, PRH2 (proline rich protein HaeIII subfamily 2) [NCBI Gene 5555] {aka PRP-1/PRP-2, Pr, pr1/Pr2}, MUC4 (mucin 4, cell surface associated) [NCBI Gene 4585] {aka ASGP, HSA276359, MUC-4}, SPTB (spectrin beta, erythrocytic) [NCBI Gene 6710] {aka EL3, HS2, HSPTB1, SPH2}, OPRPN (opiorphin prepropeptide) [NCBI Gene 58503] {aka BPLP, PRL1, PROL1, opiorphin}, DEFB1 (defensin beta 1) [NCBI Gene 1672] {aka BD1, DEFB-1, DEFB101, HBD1}, CD3G (CD3 gamma subunit of T-cell receptor complex) [NCBI Gene 917] {aka CD3-GAMMA, CD3GAMMA, IMD17, T3G}, ANK1 (ankyrin 1) [NCBI Gene 286] {aka ANK, SPH1, SPH2, ankyrin-1}, SLC26A10P (solute carrier family 26 member 10, pseudogene) [NCBI Gene 65012] {aka SLC26A10}, MMP7 (matrix metallopeptidase 7) [NCBI Gene 4316] {aka MMP-7, MPSL1, PUMP-1}, MSMB (microseminoprotein beta) [NCBI Gene 4477] {aka HPC13, IGBF, MSP, MSPB, PN44, PRPS}, CLCA1 (chloride channel accessory 1) [NCBI Gene 1179] {aka CACC, CACC1, CLCRG1, CaCC-1, GOB5, hCLCA1}, PLEC (plectin) [NCBI Gene 5339] {aka EBS1, EBS5A, EBS5B, EBS5C, EBS5D, EBSMD}, HMBS (hydroxymethylbilane synthase) [NCBI Gene 3145] {aka ENCEP, LENCEP, PBG-D, PBGD, PORC, UPS}, CKB (creatine kinase B) [NCBI Gene 1152] {aka B-CK, BCK, CKBB, CPK-B, HEL-211, HEL-S-29}, LORICRIN (loricrin cornified envelope precursor protein) [NCBI Gene 4014] {aka LOR}, MMP10 (matrix metallopeptidase 10) [NCBI Gene 4319] {aka SL-2, STMY2}
- **Diseases:** sexual (MESH:D050035), cancer (MESH:D009369), CE (OMIM:163000), RESEARCH (MESH:D014947), deep vein thrombosis (MESH:D020246), erosion (MESH:D014077), infection (MESH:D007239), BLOOD (MESH:D006402), death (MESH:D003643), acne (MESH:D000152), vaginitis (MESH:D014627), embolisms (MESH:D004617)
- **Chemicals:** guanine (MESH:D006147), thymine (MESH:D013941), uracil (MESH:D014498), FITC (MESH:D016650), uridine (MESH:D014529), DMAC (MESH:C018523), peptides (MESH:D010455), cytosine (MESH:D003596), water (MESH:D014867), starch (MESH:D013213), urea (MESH:D014508), heme (MESH:D006418), humic acid (MESH:D006812), Bluestar (-), creatinine (MESH:D003404), DAPI (MESH:C007293), bisulfite (MESH:C042345), phenolphthalein (MESH:D020113), Luminol (MESH:D008165)
- **Species:** Streptococcus oralis (species) [taxon 1303], Prevotella (genus) [taxon 838], Cutibacterium acnes (species) [taxon 1747], Faecalibacterium (genus) [taxon 216851], Bacteroides uniformis (species) [taxon 820], Bifidobacterium (genus) [taxon 1678], Homo sapiens (human, species) [taxon 9606], Clostridium (genus) [taxon 1485], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Staphylococcus (genus) [taxon 1279], Lactobacillus iners (species) [taxon 147802], Lactobacillus gasseri (species) [taxon 1596], Corynebacterium (genus) [taxon 1716], Lactobacillus crispatus (species) [taxon 47770], Streptococcus salivarius (species) [taxon 1304], Pseudomonas (RNA similarity group I, genus) [taxon 286], Bacillus anthracis (anthrax bacterium, species) [taxon 1392]

## Full text

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## Figures

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## References

193 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940693/full.md

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Source: https://tomesphere.com/paper/PMC12940693