# Association of Urinary Complement Peptides with Kidney Function and Progression of Kidney Disease

**Authors:** Thi Minh Nghia Nguyen, Margarita Kondyli, Harald Mischak, Felix Keller, Joachim Beige, Agnieszka Latosinska, Justyna Siwy

PMC · DOI: 10.3390/ijms27041982 · International Journal of Molecular Sciences · 2026-02-19

## TL;DR

This study finds that specific peptides in urine can predict kidney function and disease progression, offering new insights for personalized treatment.

## Contribution

The study identifies urinary complement-derived peptides as novel biomarkers for kidney disease progression beyond traditional markers.

## Key findings

- Fifty-two complement-derived peptides were significantly related to estimated glomerular filtration rate (eGFR) independently of albuminuria.
- Eighteen peptides were significantly associated with major adverse kidney events after adjusting for clinical covariates.
- A machine learning model using these peptides improved prediction of adverse kidney events compared to traditional markers.

## Abstract

Complement activation has been implicated in many kidney diseases, but it remains unclear whether urinary complement-derived peptides reflect kidney function beyond albuminuria and predict disease progression. We analyzed mass spectrometry-based urinary peptidomics data from 10,939 individuals with chronic kidney disease and healthy controls. Fifty-eight complement-derived peptides were identified, predominantly from complement factor B (CFB) and C3. Of these, fifty-two were significantly related to estimated glomerular filtration rate (eGFR) independently of albuminuria, mostly inversely. Several C3- and CFB-derived peptides were also associated with specific kidney disease etiologies. In a longitudinal analysis of 3964 individuals (median follow-up 2.91 years), 18 of these peptides were significantly related to a major adverse kidney event (MAKE, defined as ≥40% eGFR decline, end-stage kidney disease or death) after adjustment for clinical covariates, indicating prognostic information beyond traditional risk markers. In the independent test cohort, combining these peptides in a machine learning-based model and adding the resulting risk score to clinical parameters significantly improved MAKE prediction (AUC 0.801 vs. 0.778, p = 0.031). Thus, urinary complement-derived peptides provide independent and clinically relevant information on kidney function and disease progression, supporting their potential value in the identification of high-risk patients and guiding more personalized therapy.

## Linked entities

- **Proteins:** C3 (complement C3)
- **Diseases:** chronic kidney disease (MONDO:0005300), end-stage kidney disease (MONDO:0004375)

## Full-text entities

- **Genes:** CFB (complement factor B) [NCBI Gene 629] {aka AHUS4, ARMD14, BF, BFD, CFAB, CFBD}, REN (renin) [NCBI Gene 5972] {aka ADTKD4, HNFJ2, RTD}, CRIPTO3 (cripto, EGF-CFC family member 3) [NCBI Gene 6998] {aka CR-3, CRIPTO-3, TDGF1, TDGF1P3, TDGF2, TDGF3}, C4A (complement C4A (Chido/Rodgers blood group)) [NCBI Gene 720] {aka C4, C4A2, C4A3, C4A4, C4A6, C4AD}, CR1 (complement C3b/C4b receptor 1 (Knops blood group)) [NCBI Gene 1378] {aka C3BR, C4BR, CD35, KN}, CFD (complement factor D) [NCBI Gene 1675] {aka ADIPSIN, ADN, DF, PFD}, CRIPTOP4 (CRIPTO pseudogene 4) [NCBI Gene 22815] {aka CR-4, CRIPTO-4, TDGF1P4, TDGF4}, C1QA (complement C1q A chain) [NCBI Gene 712] {aka C1QD1}, MBL2 (mannose binding lectin 2) [NCBI Gene 4153] {aka COLEC1, HSMBPC, MBL, MBL2D, MBP, MBP-C}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, C4B (complement C4B (Chido/Rodgers blood group)) [NCBI Gene 721] {aka C4B1, C4B12, C4B3, C4B5, C4BD, C4F}, C5AR1 (complement C5a receptor 1) [NCBI Gene 728] {aka C5A, C5AR, C5R1, CD88}, C3 (complement C3) [NCBI Gene 718] {aka AHUS5, ARMD9, ASP, C3a, C3b, CPAMD1}, C5 (complement C5) [NCBI Gene 727] {aka C5D, C5a, C5b, CPAMD4, ECLZB}
- **Diseases:** tissue injury (MESH:D017695), SLE (MESH:D008180), ADPKD (MESH:D016891), IgA nephropathy (MESH:D005922), compromised kidney function (MESH:D007680), proteinuria (MESH:D011507), diabetic kidney disease (MESH:D003928), autoimmune disorders (MESH:D001327), FSGS (MESH:D005923), abnormalities of kidney structure or function (MESH:D007674), CKD (MESH:D051436), diabetes mellitus (MESH:D003920), ANCA-associated vasculitis (MESH:D056648), ESKD (MESH:D007676), tubular injury (MESH:D000230), MCD (MESH:D009402), CAKUT (MESH:C566906), hypertension (MESH:D006973), death (MESH:D003643), C3-glomerulopathy (MESH:C562875), fibrosis (MESH:D005355), albuminuria (MESH:D000419), Disease (MESH:D004194), injury to (MESH:D014947), aHUS (MESH:D065766), glomerulonephritis (MESH:D005921), inflammation (MESH:D007249)
- **Chemicals:** creatinine (MESH:D003404), 2-propanol (MESH:D019840), sodium dodecyl sulfate (MESH:D012967), lipids (MESH:D008055), pegcetacoplan (MESH:C000716074), H2O. (MESH:D014867), carbohydrate (MESH:D002241), urea (MESH:D014508), amino acid (MESH:D000596), formic acid (MESH:C030544), proline (MESH:D011392), NaCl (MESH:D012965), C3a (-), methionine (MESH:D008715)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## References

47 references — full list in the complete paper: https://tomesphere.com/paper/PMC12940597/full.md

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Source: https://tomesphere.com/paper/PMC12940597